View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20812_low_8 (Length: 317)
Name: NF20812_low_8
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20812_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 25 - 299
Target Start/End: Original strand, 33238115 - 33238389
Alignment:
| Q |
25 |
ctcaacaaagttgacgatgagttcctgctgttaaattctatccatgacagattgcaggacaatccacaagtgataacaggttacaagaaagaggatttca |
124 |
Q |
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| T |
33238115 |
ctcaacaaagttgacgatgagatcctgctgttaaattctatccatgacagattgcaggacaatccacaagtgataaaaggttacaagaaagaggatttca |
33238214 |
T |
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| Q |
125 |
agattttgtggatcccgatctgggatgttgatgatcagaagatcaagttcgattcattgaagaataagatcagattttatgcagtggactacttctctga |
224 |
Q |
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| T |
33238215 |
agattttgtggatcccgatctgggatgtcgatgatcagaagatcaagttcgattcgttgaagaataagatcagattttatgcagtggactacttctctga |
33238314 |
T |
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| Q |
225 |
gttacctggcattagactcataagagagcatttgaattattcagataagcctatcgtcccagtgttgagcccttt |
299 |
Q |
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| T |
33238315 |
gttacctggcattagactcataagagagcatttgaattattcggataagcctatcgtcccagtgttgagcccttt |
33238389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 33230467 - 33230560
Alignment:
| Q |
50 |
tgctgttaaattctatccatgacagattgcaggacaatccacaag---tgataacagg---ttacaagaaagaggatttcaagattttgtggat |
137 |
Q |
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| T |
33230467 |
tgctgttaaattcaatctataaaagattgcaggacaaaccacaagaagtgttaaaaggaagtttcaagaaagaggatttcaagattttgtggat |
33230560 |
T |
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