View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20812_low_9 (Length: 296)
Name: NF20812_low_9
Description: NF20812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20812_low_9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 26798566 - 26798393
Alignment:
| Q |
122 |
gcggtcactaaaggtctctattactatatgacaaacttcttgtagtgtgtgtatagccnnnnnnnccaacgtaactcatcaaaatgtcttctgaacctaa |
221 |
Q |
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| T |
26798566 |
gcggtcactaaaggtctctattactatatgacaaacttcttgtagtgtgtgtatagccaaaaaa-ccaacgtaactcatcaaaatgtcttctgaacctaa |
26798468 |
T |
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| Q |
222 |
agtagtgataaaagaggaggatgataacaacacagagcataatcatcatgaaaatcgagtttatgatcattctca |
296 |
Q |
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| T |
26798467 |
agttgtgataaaagaggaggaagataacaacacggagcataatcatcatgacaatcgagtttatgatcattctca |
26798393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 26798885 - 26798954
Alignment:
| Q |
33 |
tattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaat |
102 |
Q |
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| T |
26798885 |
tattaattgttgttatctttttattgttttggtgaatatgccctcataaaaagttagtgatagattaaat |
26798954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 27518641 - 27518565
Alignment:
| Q |
25 |
aatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaat |
102 |
Q |
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| T |
27518641 |
aatgaggttattaattgctgttatttttttattgttttagtaaatatgccctcataaaaagtt-gtgatatattaaat |
27518565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 15065268 - 15065341
Alignment:
| Q |
16 |
atcaaaaccaatgaagttattaattgttgttatctttt--tattgttttggtaaatatgccctcacaaaaagtt |
87 |
Q |
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| T |
15065268 |
atcaaaaccaatgaagttattagttgttattttttttttttattgttttggcaaatatgccctgataaaaagtt |
15065341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23010874 - 23010791
Alignment:
| Q |
1 |
aagaaaacaaaaaacatcaaaaccaatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaa |
84 |
Q |
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| T |
23010874 |
aagaaaacaaaaaacataaaaaccaatgaggttattaatagttgttatctttttattgttttggcaaatatgtcctcataaaaa |
23010791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 15028898 - 15028852
Alignment:
| Q |
10 |
aaaaacatcaaaaccaatgaagttattaattgttgttatctttttatt |
57 |
Q |
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| T |
15028898 |
aaaaacatcaaaacaaatgatgttatta-ttgttgttatctttttatt |
15028852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 6087851 - 6087883
Alignment:
| Q |
11 |
aaaacatcaaaaccaatgaagttattaattgtt |
43 |
Q |
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| T |
6087851 |
aaaacatcaaaaccaatgaagttatttattgtt |
6087883 |
T |
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