View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20813_high_12 (Length: 203)
Name: NF20813_high_12
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20813_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 26951964 - 26951786
Alignment:
| Q |
17 |
aataagcattgtcaaatgtatttggagaggttgtgtcaagtggggacaaatttaaatcaccacctgttctcggacaacttgattgcaatgaatttgcaaa |
116 |
Q |
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| T |
26951964 |
aataagcattgtcaaatgtatttggagaggttgtgtcaagtggggacaaatttaaatcaccacctgttctgggacaacttgattgcaatgaatttgcaaa |
26951865 |
T |
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| Q |
117 |
agatgaatctatgttgttctcattgtaaatccttgttctgaagaatctacaactagcttcaccaattgtctgtgctcct |
195 |
Q |
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| T |
26951864 |
agatgaatctatgttgttttcattgtaaatccttgttctgaagaatctacaactagcttcaccaattgtgtgtgatcct |
26951786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 26961838 - 26961670
Alignment:
| Q |
17 |
aataagcattgtcaaatgtatttggagaggttgtgtcaagtggggacaaatttaaatcaccacctgttctcggacaacttgattgcaatgaatttgcaaa |
116 |
Q |
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| T |
26961838 |
aataagaattgtcaaatgtgtttggagtagtggtgtcaagtggtgacaaattgtcatcaccacctgtggtaggacaatttgcttgtaatgatgttgcaaa |
26961739 |
T |
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| Q |
117 |
agatgaatctatgttgttctcattgtaaatccttgttctgaagaatctacaactagcttcaccaattgt |
185 |
Q |
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| T |
26961738 |
tgatgaatctatgttgtcatcgttgtaaatcctggttctgaagaatctacaacttgcttgaccaattgt |
26961670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 26955129 - 26955050
Alignment:
| Q |
116 |
aagatgaatctatgttgttctcattgtaaatccttgttctgaagaatctacaactagcttcaccaattgtctgtgctcct |
195 |
Q |
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| T |
26955129 |
aagatgaatctatgttgttctcattgtaaatccttgttctgaagaatctacaactagcttcaccaattgtgtgtgatcct |
26955050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 26955196 - 26955135
Alignment:
| Q |
17 |
aataagcattgtcaaatgtatttggagaggttgtgtcaagtggggacaaatttaaatcacca |
78 |
Q |
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| T |
26955196 |
aataagcaatgtcaaatgtctctggagtgatggtgtcaagcggtgacaaatttaaatcacca |
26955135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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