View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20813_high_6 (Length: 318)
Name: NF20813_high_6
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20813_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 51756221 - 51755925
Alignment:
| Q |
18 |
atttgattcctccatttgcaaaggaagcaaactcgaaatcttcatcccaaaacctaacaacgttgccattaatcaccgttaaatcttggcatgtatacca |
117 |
Q |
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| T |
51756221 |
atttgattcctccatttgcaaaggaagcaaactcgaactcttcatcccaaaacctaacaacgttgccgttaatcaccgttaaatcttggcatgtatacca |
51756122 |
T |
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| Q |
118 |
cccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttann |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756121 |
cccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttatt |
51756022 |
T |
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| Q |
218 |
nnnnnnaacgtctcaacactttccttgcattctctgtcaatgtcatcttcatc------gtcataataatacaaggtaaacttcatctttccctttg |
308 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51756021 |
ttttttaacgtctcaacactctccttgcattctctgtcaatgtcatcttcatcttcatggtcataataatacaaggtaaacttcatctttccctttg |
51755925 |
T |
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