View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20813_low_1 (Length: 468)

Name: NF20813_low_1
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20813_low_1
NF20813_low_1
[»] chr8 (3 HSPs)
chr8 (26-367)||(29683789-29684130)
chr8 (402-434)||(2692151-2692183)
chr8 (402-434)||(33099850-33099882)
[»] chr3 (6 HSPs)
chr3 (402-434)||(45644049-45644081)
chr3 (402-439)||(49429261-49429298)
chr3 (402-434)||(3807075-3807107)
chr3 (402-434)||(14030943-14030975)
chr3 (402-434)||(22102348-22102380)
chr3 (402-434)||(22177296-22177328)
[»] chr7 (1 HSPs)
chr7 (402-437)||(37546516-37546551)
[»] chr2 (3 HSPs)
chr2 (404-437)||(9169739-9169772)
chr2 (402-434)||(35190454-35190486)
chr2 (402-434)||(36214180-36214212)
[»] chr5 (2 HSPs)
chr5 (402-434)||(1611374-1611406)
chr5 (402-434)||(43398585-43398617)
[»] chr4 (2 HSPs)
chr4 (402-434)||(5662036-5662068)
chr4 (402-434)||(32779024-32779056)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 26 - 367
Target Start/End: Original strand, 29683789 - 29684130
Alignment:
Q  26 atattcatacctgattgtgcagagaaggaggaagacatgatcgtttctttttcttctgaacgctgaaacttctttatctcgttgaannnnnnnn-gtgtg 124  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  29683789 atattcatacctgattgtgtagagaaggaggaagacatgatcgtttctttttcttctgaacgctgaaacttctttatctcgttgaatttttttttgtgtg 29683888  T
Q  125 cactttttcttatggtttgcaagccaatttatagataatgaggttagggtttctttttgaggttgctttatggacaagaaagtaatttgttgagattttt 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29683889 cactttttcttatggtt-gcaagccaatttatagataatgaggttagggtttctttttaaggttgctttatggacaagaaagtaatttgttgagattttt 29683987  T
Q  225 tcggctagaataattatttagatttggatttaatacatctttcgtatgatcaatcctaaaaaagaccattcaaagatccaacagtccaagttatcaaccc 324  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  29683988 tcggctacaataattatttagatttggatttaatacatctttcgtatgatcaatcctaaaaaaaaccattcaaagatccaaccgtccaagtcatcaaccc 29684087  T
Q  325 acacctaaaccaaatcacccaatcaaatcacagaaactaaatc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29684088 acacctaaaccaaatcacccaatcaaatcacagaaactaaatc 29684130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 2692183 - 2692151
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  2692183 tttcctttatcatttaaaaaatgtaacaaacta 2692151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 33099882 - 33099850
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  33099882 tttcctttatcatttaaaaaatgtaacaaacta 33099850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 45644049 - 45644081
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||||||||||    
T  45644049 tttcctttatcatttaaaaaatgtaataaacta 45644081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 49429298 - 49429261
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaactaaatta 439  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  49429298 tttcctttatcatttaaaaaatgtaacaaactagatta 49429261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 3807075 - 3807107
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  3807075 tttcctttatcatttaaaaaatgtaacaaacta 3807107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 14030975 - 14030943
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  14030975 tttcctttatcatttaaaaaatgtaacaaacta 14030943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 22102348 - 22102380
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  22102348 tttcctttatcatttaaaaaatgtaacaaacta 22102380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 22177296 - 22177328
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  22177296 tttcctttatcatttaaaaaatgtaacaaacta 22177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 437
Target Start/End: Complemental strand, 37546551 - 37546516
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaactaaat 437  Q
    |||||||||||||||||||||||||| |||||||||    
T  37546551 tttcctttatcatttaaaaaatgtaacaaactaaat 37546516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 9169739 - 9169772
Alignment:
Q  404 tcctttatcatttaaaaaatgtaataaactaaat 437  Q
    |||||||||||||||||||||||| |||||||||    
T  9169739 tcctttatcatttaaaaaatgtaacaaactaaat 9169772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 35190486 - 35190454
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  35190486 tttcctttatcatttaaaaaatgtaacaaacta 35190454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 36214180 - 36214212
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  36214180 tttcctttatcatttaaaaaatgtaacaaacta 36214212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 1611374 - 1611406
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  1611374 tttcctttatcatttaaaaaatgtaacaaacta 1611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 43398617 - 43398585
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  43398617 tttcctttatcatttaaaaaatgtaacaaacta 43398585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 5662036 - 5662068
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  5662036 tttcctttatcatttaaaaaatgtaacaaacta 5662068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 32779056 - 32779024
Alignment:
Q  402 tttcctttatcatttaaaaaatgtaataaacta 434  Q
    |||||||||||||||||||||||||| ||||||    
T  32779056 tttcctttatcatttaaaaaatgtaacaaacta 32779024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University