View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20813_low_10 (Length: 257)
Name: NF20813_low_10
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20813_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 11398491 - 11398255
Alignment:
| Q |
21 |
tattattagagataaagcacctttggagatagaataggctgtgccagatccttttggttagaatgttttaaactgcaagagatttcctgcaaatattcgt |
120 |
Q |
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| T |
11398491 |
tattattagagataaagcacctttggagatagaataggctgtgccagatccttttggttagaatgttttaaactgcaagagatttcctgcaaatattcgt |
11398392 |
T |
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| Q |
121 |
ccaaaaagcatcagtttgttgacagacatctaggaaactaagatataaaccagaaggaaaagaaagaaatcaaaagggaaagtcaaaggcattgtactat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11398391 |
ccaaaaagcatcagtttgttgacagacatctaggaaactaagatataaaccagaaggaaaagaaagaaatctaaagggaaagtcaaaggcattgtactat |
11398292 |
T |
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| Q |
221 |
gcagcnnnnnnnnttaagaggggttttacgcaatctt |
257 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
11398291 |
gcagcaaaaaaatttaagaggggttttacgcaatctt |
11398255 |
T |
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