View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20813_low_11 (Length: 249)

Name: NF20813_low_11
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20813_low_11
NF20813_low_11
[»] chr6 (3 HSPs)
chr6 (16-227)||(31262810-31263021)
chr6 (32-116)||(19845504-19845589)
chr6 (36-116)||(15342386-15342467)
[»] scaffold0186 (1 HSPs)
scaffold0186 (36-116)||(27627-27708)
[»] chr8 (4 HSPs)
chr8 (36-116)||(24921069-24921150)
chr8 (36-116)||(1083397-1083478)
chr8 (36-116)||(31390889-31390970)
chr8 (36-116)||(40502704-40502785)
[»] chr3 (3 HSPs)
chr3 (36-116)||(13819041-13819122)
chr3 (36-116)||(4267597-4267678)
chr3 (69-116)||(12211238-12211285)
[»] chr1 (4 HSPs)
chr1 (36-116)||(29496742-29496823)
chr1 (36-116)||(24707721-24707802)
chr1 (36-116)||(19148840-19148921)
chr1 (36-116)||(23675894-23675975)
[»] chr7 (1 HSPs)
chr7 (36-116)||(41549133-41549214)
[»] chr4 (1 HSPs)
chr4 (36-116)||(55042433-55042514)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 31263021 - 31262810
Alignment:
Q  16 attatactatacgattgttgaacaaagttagtaactagcaacatattatgtttcattaatattataggtgcaacatggttctactaaattaaaaatagca 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31263021 attatactatacgattgttcaacaaagttagtaactagcaacatattatgtttcattaatattataggtgcaacatggttctactaaattaaaaatagca 31262922  T
Q  116 tnnnnnnnttttacattacaattttatcaagccacttcattaatttaaatcttctttctcgtatcaccattcatccacggcaaacgcagaaccccacttc 215  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31262921 taaaaattttttacattacaattttatcaagccacttcattaatttaaatcttctttctcgtatcaccattcatccacggcaaacgcagaaccccacttc 31262822  T
Q  216 atgtcaaaacgt 227  Q
    ||||||||||||    
T  31262821 atgtcaaaacgt 31262810  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 19845589 - 19845504
Alignment:
Q  32 gttgaacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  19845589 gttgaacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcaacatggtcctattaaataaaaaatagcat 19845504  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 15342386 - 15342467
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| ||||||||||| ||||||||  |||||| |||||||||| || ||| ||||||| ||||||| | |||||||||||    
T  15342386 aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcgacatggtcctactaattaaaaaatagcat 15342467  T

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Target: scaffold0186 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 27708 - 27627
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  27708 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 27627  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 24921069 - 24921150
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  24921069 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 24921150  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 1083397 - 1083478
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| |||| |||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  1083397 aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 1083478  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 31390970 - 31390889
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| |||| |||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  31390970 aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 31390889  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 40502704 - 40502785
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| ||||||||||| ||||||||  |||||| |||||||||| || ||||||||||| ||||||| | |||||||||||    
T  40502704 aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcaacatggtcctactaattaaaaaatagcat 40502785  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 13819041 - 13819122
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  13819041 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 13819122  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 4267678 - 4267597
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  4267678 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 4267597  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 12211285 - 12211238
Alignment:
Q  69 cattaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    |||||||||||||||||| |||| || ||||||||| |||||||||||    
T  12211285 cattaatattataggtgcgacattgtcctactaaataaaaaatagcat 12211238  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 29496823 - 29496742
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| ||||||||||| ||||||||  |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||    
T  29496823 aacaatgttagtaactaacaacatatggtgtttccaataatattataggtgcaacatggtcctactaaataaaaagtagcat 29496742  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 24707802 - 24707721
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| ||||| | ||||||| | |||||||||||    
T  24707802 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacatgatcctactaattaaaaaatagcat 24707721  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 19148840 - 19148921
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  19148840 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 19148921  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 23675894 - 23675975
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  23675894 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 23675975  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 41549214 - 41549133
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  41549214 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 41549133  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 55042514 - 55042433
Alignment:
Q  36 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 116  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  55042514 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 55042433  T

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