View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20813_low_3 (Length: 361)

Name: NF20813_low_3
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20813_low_3
NF20813_low_3
[»] chr4 (5 HSPs)
chr4 (1-343)||(54641430-54641776)
chr4 (157-343)||(54641770-54641955)
chr4 (157-343)||(54938252-54938440)
chr4 (1-152)||(54641280-54641436)
chr4 (2-158)||(54938097-54938257)
[»] chr7 (2 HSPs)
chr7 (157-343)||(13078070-13078257)
chr7 (9-158)||(13078259-13078413)
[»] chr3 (2 HSPs)
chr3 (157-343)||(39984227-39984414)
chr3 (9-158)||(39984071-39984225)
[»] chr2 (6 HSPs)
chr2 (157-343)||(14685096-14685283)
chr2 (157-343)||(21306952-21307139)
chr2 (157-343)||(40421920-40422107)
chr2 (9-158)||(14685285-14685439)
chr2 (9-158)||(40422109-40422263)
chr2 (9-145)||(21307141-21307282)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 54641776 - 54641430
Alignment:
Q  1 aactaccatgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattca 100  Q
    |||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641776 aactactatgggcaccacgacatcaatcatcctgtatttttttatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattca 54641677  T
Q  101 cacatcgctctatcattatactt-----tatgggaccctggtggacacttttgttatacttcaaatcccaccgcgataggagaagagaaaggctgggaag 195  Q
    || ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641676 catatcgctctatcattatacttcaagttatgggaccctggtggacacttttgttatacttcaaatcccaccgcgataggagaagagaaaggctgggaag 54641577  T
Q  196 atgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgtggaaatggaacaagagagc-aaacggatttgtgcaaact 294  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54641576 atgtagaaatggggaaaatagagag--atgtagaaaatgcccatatgcatgtcatgattgtggaaatggaacaagagagcaaaacggatttgtgcaaact 54641479  T
Q  295 tctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54641478 tctttgcaataaagaaatgagaatggggtcagagataaggggaactact 54641430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 157 - 343
Target Start/End: Complemental strand, 54641955 - 54641770
Alignment:
Q  157 caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  54641955 caaatcccaccgcgataggagaagagaaaggctgggaagatgtacaaatggggaaaatagagaga--tgtagaaaatgcccgtatgcatgtcatgattgt 54641858  T
Q  257 ggaaatggaacaagagagcaaa-cggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54641857 ggaaatggaacaggagagcaaaacggatttgtgcaaacttctttgcaatagagaaatgagtatggggtcagagataaggggaactact 54641770  T

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Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 157 - 343
Target Start/End: Complemental strand, 54938440 - 54938252
Alignment:
Q  157 caaatcccaccgcgataggagaagagaaaggctgggaag-atgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattg 255  Q
    ||||||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  54938440 caaatcccaccgcgataggagaagagaaaggtttggaaggatgaagaaatggggaaaatagagagatatgtagaaaatgcccatatgcatgtcatgatta 54938341  T
Q  256 tggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    ||||||||||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  54938340 tggaaatggaacaggagagcaaaacggatttgtgcaaacttaattgcaataaagaaatgagtatggggtcagagataagggggactact 54938252  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 54641436 - 54641280
Alignment:
Q  1 aactaccatgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattca 100  Q
    |||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641436 aactactatgggcaccacgacatcaatcatcctgtatttttttatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattca 54641337  T
Q  101 cacatcgctctatcattatact-----ttatgggaccctggtggacacttttgttat 152  Q
    |||||| | || ||||||||||     ||||||||||||||||||||||| ||||||    
T  54641336 cacatcaccctgtcattatacttcaagttatgggaccctggtggacacttctgttat 54641280  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 54938257 - 54938097
Alignment:
Q  2 actaccatgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcac 101  Q
    ||||| ||||||||||| ||||||||||||| |||        |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54938257 actactatgggcaccacaacatcaatcatccagtatttttttctcaaaaatatcactacaaacagagtatatgatcagggcataagtttgcatgattcac 54938158  T
Q  102 acatcgctctatcattatact----ttatgggaccctggtggacacttttgttatacttca 158  Q
    |||||||||| ||||||||||    ||||||||||| ||||||||||| || ||| |||||    
T  54938157 acatcgctctgtcattatacttcagttatgggacccaggtggacacttatgatatccttca 54938097  T

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Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 13078070 - 13078257
Alignment:
Q  157 caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt 256  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  13078070 caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt 13078169  T
Q  257 ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    |||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078170 ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 13078257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 13078259 - 13078413
Alignment:
Q  9 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcgc 108  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  ||    
T  13078259 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 13078358  T
Q  109 tctatcattatact-----ttatgggaccctggtggacacttttgttatacttca 158  Q
    ||| ||||||||||     ||||||||||| ||||||||||| || ||| |||||    
T  13078359 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttca 13078413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 157 - 343
Target Start/End: Complemental strand, 39984414 - 39984227
Alignment:
Q  157 caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt 256  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  39984414 caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt 39984315  T
Q  257 ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    |||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984314 ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 39984227  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 39984225 - 39984071
Alignment:
Q  9 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcgc 108  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  ||    
T  39984225 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 39984126  T
Q  109 tctatcattatact-----ttatgggaccctggtggacacttttgttatacttca 158  Q
    ||| ||||||||||     ||||||||||| ||||||||||| || ||| |||||    
T  39984125 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttca 39984071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 14685096 - 14685283
Alignment:
Q  157 caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt 256  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  14685096 caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt 14685195  T
Q  257 ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    |||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685196 ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 14685283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 21306952 - 21307139
Alignment:
Q  157 caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt 256  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  21306952 caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt 21307051  T
Q  257 ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    |||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21307052 ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 21307139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 40421920 - 40422107
Alignment:
Q  157 caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt 256  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  40421920 caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt 40422019  T
Q  257 ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 343  Q
    |||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40422020 ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactact 40422107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 14685285 - 14685439
Alignment:
Q  9 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcgc 108  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  ||    
T  14685285 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 14685384  T
Q  109 tctatcattatact-----ttatgggaccctggtggacacttttgttatacttca 158  Q
    ||| ||||||||||     ||||||||||| ||||||||||| || ||| |||||    
T  14685385 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttca 14685439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 40422109 - 40422263
Alignment:
Q  9 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcgc 108  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  ||    
T  40422109 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 40422208  T
Q  109 tctatcattatact-----ttatgggaccctggtggacacttttgttatacttca 158  Q
    ||| ||||||||||     ||||||||||| ||||||||||| || ||| |||||    
T  40422209 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttca 40422263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 21307141 - 21307282
Alignment:
Q  9 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcgc 108  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  ||    
T  21307141 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 21307240  T
Q  109 tctatcattatact-----ttatgggaccctggtggacactt 145  Q
    ||| ||||||||||     ||||||||||| |||||||||||    
T  21307241 tctgtcattatacttcaagttatgggacccaggtggacactt 21307282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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