View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20813_low_4 (Length: 329)

Name: NF20813_low_4
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20813_low_4
NF20813_low_4
[»] chr8 (10 HSPs)
chr8 (6-269)||(5973296-5973559)
chr8 (150-219)||(5721437-5721506)
chr8 (149-184)||(41063085-41063120)
chr8 (6-88)||(5939580-5939661)
chr8 (29-67)||(5979571-5979609)
chr8 (149-198)||(7944772-7944821)
chr8 (138-198)||(9107786-9107846)
chr8 (6-64)||(5910975-5911033)
chr8 (139-196)||(38009490-38009547)
chr8 (149-249)||(15078467-15078570)
[»] chr7 (10 HSPs)
chr7 (133-268)||(38971105-38971237)
chr7 (149-246)||(9021960-9022055)
chr7 (149-245)||(7398167-7398261)
chr7 (135-249)||(26917976-26918092)
chr7 (150-249)||(27237714-27237811)
chr7 (161-268)||(17800412-17800518)
chr7 (140-249)||(36903591-36903696)
chr7 (147-239)||(9014930-9015019)
chr7 (149-199)||(18201004-18201054)
chr7 (146-238)||(36891460-36891552)
[»] chr1 (6 HSPs)
chr1 (149-246)||(39135020-39135117)
chr1 (150-305)||(45758310-45758465)
chr1 (141-249)||(5533103-5533208)
chr1 (150-219)||(1633823-1633890)
chr1 (153-198)||(17322700-17322745)
chr1 (208-249)||(50146106-50146147)
[»] chr6 (5 HSPs)
chr6 (136-249)||(4036784-4036895)
chr6 (136-228)||(20611502-20611592)
chr6 (149-246)||(2477876-2477971)
chr6 (157-249)||(27131573-27131664)
chr6 (150-195)||(21183856-21183901)
[»] chr2 (13 HSPs)
chr2 (149-242)||(29694095-29694185)
chr2 (149-249)||(11952900-11953001)
chr2 (140-242)||(10252125-10252227)
chr2 (149-219)||(21190911-21190981)
chr2 (149-219)||(30175530-30175600)
chr2 (149-219)||(45156332-45156402)
chr2 (149-237)||(28425846-28425935)
chr2 (149-241)||(7742260-7742351)
chr2 (149-225)||(36949264-36949338)
chr2 (155-211)||(22788070-22788126)
chr2 (149-249)||(21665991-21666088)
chr2 (136-194)||(37182371-37182429)
chr2 (138-186)||(42027110-42027158)
[»] chr5 (7 HSPs)
chr5 (166-249)||(2024931-2025011)
chr5 (149-249)||(15639168-15639267)
chr5 (153-249)||(34425621-34425716)
chr5 (150-238)||(2531023-2531108)
chr5 (221-268)||(10407322-10407369)
chr5 (157-246)||(7078882-7078970)
chr5 (138-198)||(24395445-24395505)
[»] chr3 (9 HSPs)
chr3 (153-249)||(26279259-26279353)
chr3 (150-237)||(25855304-25855391)
chr3 (150-218)||(23641451-23641517)
chr3 (208-265)||(49392945-49393002)
chr3 (208-268)||(8420180-8420240)
chr3 (150-224)||(6937567-6937642)
chr3 (149-186)||(8420138-8420175)
chr3 (155-196)||(36180330-36180371)
chr3 (150-246)||(39718578-39718674)
[»] chr4 (10 HSPs)
chr4 (146-249)||(36363160-36363268)
chr4 (138-249)||(15734799-15734910)
chr4 (137-184)||(22076987-22077034)
chr4 (203-269)||(22077036-22077102)
chr4 (157-219)||(24404217-24404279)
chr4 (149-246)||(27111752-27111847)
chr4 (168-241)||(2135617-2135692)
chr4 (157-224)||(22315787-22315854)
chr4 (140-233)||(30507288-30507378)
chr4 (269-305)||(36118597-36118633)
[»] scaffold0022 (2 HSPs)
scaffold0022 (190-268)||(39916-39994)
scaffold0022 (190-268)||(137976-138054)
[»] scaffold1320 (1 HSPs)
scaffold1320 (149-249)||(1063-1166)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 5973559 - 5973296
Alignment:
Q  6 agaaattccattccctctacgtcaaatttagtaaatcaaccacaccctttgtcattaagagttacatattattgtaacagaagctaatgtcaagaggcaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5973559 agaaattccattccctctacgtcaaatttagtaaatcaaccacaccctttgtcattaagagttacatattattgtaacagaagctaatgtcaagaggcaa 5973460  T
Q  106 ttaccgaattaaaacatattcatatacattagcagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaa 205  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5973459 ttaccgaattaaaacatattcatacacattagcagggccagaccttggggtctgcaaaccgctcaatggagctgggcctccccaaggtatgggtcttaaa 5973360  T
Q  206 ataaaaattatagctcagtagtattactaagtactaccccactatttcccaggtttccactttt 269  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  5973359 ataaaaattatagctcagtagtattattaagtactaccccactattcctcaggtttccactttt 5973296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 5721437 - 5721506
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagc 219  Q
    |||||||||||||||||||||||||| |||||||||||| ||| ||||| || |||| ||||||||||||    
T  5721437 ttggggtgtgcaaaccgctcaatggaactgggcctccccaaggcatgggcctcaaaaaaaaaattatagc 5721506  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 41063085 - 41063120
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcct 184  Q
    ||||||||||||||||||||||||||||||||||||    
T  41063085 cttggggtgtgcaaaccgctcaatggagctgggcct 41063120  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 5939661 - 5939580
Alignment:
Q  6 agaaattccattccctctacgtcaaatttagtaaatcaaccacaccctttgtcattaagagttacatattattgtaacagaag 88  Q
    ||||||||||||| |||||||||||||||| |||||| ||  ||   ||| |||||||||||||||||| ||||||| |||||    
T  5939661 agaaattccattctctctacgtcaaatttaataaatctacgtca-aatttatcattaagagttacatataattgtaatagaag 5939580  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 5979571 - 5979609
Alignment:
Q  29 aaatttagtaaatcaaccacaccctttgtcattaagagt 67  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  5979571 aaatttagtaaatcaaccacaccctttatcattaagagt 5979609  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 7944821 - 7944772
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatggg 198  Q
    |||||||||||||||||| |||||||| |||||| ||||| |||||||||    
T  7944821 cttggggtgtgcaaaccgttcaatggaactgggcttccccaaggtatggg 7944772  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 9107786 - 9107846
Alignment:
Q  138 cagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatggg 198  Q
    ||||||| |||||| ||  |||||||| ||||||||||| ||||||||||| |||||||||    
T  9107786 cagggccggatctttggaggtgcaaacagctcaatggagttgggcctccccaaggtatggg 9107846  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 5911033 - 5910975
Alignment:
Q  6 agaaattccattccctctacgtcaaatttagtaaatcaaccacaccctttgtcattaag 64  Q
    ||||||||||||| ||| || ||||| |||||||||||| |||||||| | ||||||||    
T  5911033 agaaattccattctctccacttcaaacttagtaaatcaatcacaccctatatcattaag 5910975  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 38009547 - 38009490
Alignment:
Q  139 agggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatg 196  Q
    |||||| || ||||||||||| |||  |||||||||||||| |||||||| |||||||    
T  38009547 agggccggaccttggggtgtgtaaagagctcaatggagctgagcctccccaaggtatg 38009490  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 15078467 - 15078570
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtctta-aaataaaaatt--atagctcagtagtattactaagtactacccc 245  Q
    ||||||||  |||||  ||||||||||| ||| ||||| | | ||||||| || | ||| |||||||  |||||||||| ||| ||||||||||||||||    
T  15078467 cttggggtacgcaaagagctcaatggagttggacctcctcaaagtatgggcctcagaaaaaaaaattgtatagctcagtggtactactaagtactacccc 15078566  T
Q  246 acta 249  Q
    ||||    
T  15078567 acta 15078570  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 38971105 - 38971237
Alignment:
Q  133 attagcagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattac 232  Q
    |||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||| | |||| || ||   || ||||| |||||| ||||| || |||    
T  38971105 attagcagagccagattttggggtgtgcaaaccgctcaatggaactgggtctccccaaagtattggcct---aaaaaaaaatatagcccagtaatactac 38971201  T
Q  233 taagtactaccccactatttcccaggtttccacttt 268  Q
    ||||||||||| ||||| | ||||||||||||||||    
T  38971202 taagtactacctcactactccccaggtttccacttt 38971237  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 9022055 - 9021960
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactacccca 246  Q
    |||||||| | ||||| ||||| ||||||||||||||||| || ||||||||| ||||  ||||||||||| |||||||| |||||||||||||||||    
T  9022055 cttggggtttacaaacagctcagtggagctgggcctcccccagttatgggtctaaaaa--aaaattatagcccagtagtactactaagtactacccca 9021960  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 7398167 - 7398261
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactacccc 245  Q
    ||||||||||||||   |||||||||||||| |||||||| ||||||||| ||  |||||||| ||||||| |||||||| ||||||||||||||||    
T  7398167 cttggggtgtgcaacgagctcaatggagctgagcctccccaaggtatgggcct--aaataaaatttatagcccagtagtactactaagtactacccc 7398261  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 26918092 - 26917976
Alignment:
Q  135 tagcagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaa--ttatagctcagtagtattac 232  Q
    |||||||| | ||| || |||||||||||  ||||||||||||||||| || |  ||||||| |||| |||| |||||  |||||||||||||||| |||    
T  26918092 tagcagggtcggattttagggtgtgcaaagagctcaatggagctgggcatctctaaggtatgagtctaaaaaaaaaaaaattatagctcagtagtactac 26917993  T
Q  233 taagtactaccccacta 249  Q
    |||||||||||||||||    
T  26917992 taagtactaccccacta 26917976  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 27237811 - 27237714
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccacta 249  Q
    ||||||||||||||  ||||||||||| |||||||||| |||||||||||||  ||| ||||| |||| |||| ||| | || |||||||||||||||||    
T  27237811 ttggggtgtgcaaagagctcaatggagttgggcctccctgaggtatgggtct--aaaaaaaaactataactcaatagcactaataagtactaccccacta 27237714  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 17800518 - 17800412
Alignment:
Q  161 aaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccactatttcccaggtt 260  Q
    |||||| |||||| || |||| |||| | ||||||||  || |||| ||||||||||| | ||||||| || ||||||||| ||||||| | ||||||||    
T  17800518 aaaccgttcaatgaagttgggtctcctcaaggtatggacctaaaaa-aaaaattatagataagtagtactattaagtactatcccactactccccaggtt 17800420  T
Q  261 tccacttt 268  Q
    ||||||||    
T  17800419 tccacttt 17800412  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 249
Target Start/End: Complemental strand, 36903696 - 36903591
Alignment:
Q  140 gggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtac 239  Q
    ||||| ||||||||||||  ||||  ||||||| |||||||||||| || ||||||  |||| ||||||||  ||||||  |||||||| ||||||||||    
T  36903696 gggccggatcttggggtg--caaagagctcaattgagctgggcctctccaaggtataagtctaaaaataaa--ttatagtccagtagtactactaagtac 36903601  T
Q  240 taccccacta 249  Q
    ||||| ||||    
T  36903600 taccctacta 36903591  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 9015019 - 9014930
Alignment:
Q  147 atcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtac 239  Q
    ||||||||||||||||||  |||||||||| ||||||||| | ||||||| | ||   || |||||||||||| || ||||| ||||||||||    
T  9015019 atcttggggtgtgcaaacaactcaatggagttgggcctccgcaaggtatgagcct---aaaaaaaattatagcccaatagtactactaagtac 9014930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 18201004 - 18201054
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggt 199  Q
    |||||||| |||||||||||||||||| | |||||||||| ||||||||||    
T  18201004 cttggggtttgcaaaccgctcaatggaaccgggcctccccaaggtatgggt 18201054  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 36891460 - 36891552
Alignment:
Q  146 gatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagta 238  Q
    ||||||||| |||||||| |||| |||||| | ||||||| || || ||||| ||| |||| |||||||||||   ||||||| |||||||||    
T  36891460 gatcttgggttgtgcaaatcgctgaatggaaccgggcctctccaagatatggatctaaaaaaaaaaattatagtctagtagtactactaagta 36891552  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 39135117 - 39135020
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactacccca 246  Q
    |||||||||||||||  |||||||||| |||||||||||| ||||||||| || ||||  ||||||||||| |||||||| |||||||||||||||||    
T  39135117 cttggggtgtgcaaagagctcaatggaactgggcctccccaaggtatgggcctcaaaaacaaaattatagcccagtagtactactaagtactacccca 39135020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 305
Target Start/End: Original strand, 45758310 - 45758465
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccacta 249  Q
    ||||| |||||||||| |||||||||| ||| |||||   |||||||||||| ||||   |||||||||  |||||||| ||||||||||||||||  ||    
T  45758310 ttgggatgtgcaaaccactcaatggagatggacctccttaaggtatgggtctcaaaa---aaattatagtccagtagtactactaagtactacccccata 45758406  T
Q  250 tttcccaggtttccact----ttttcttttgggcctattagaattgggtcatcttacttt 305  Q
     | | ||||||| ||||    |||||| || | |||||||||||||||||||||| ||||    
T  45758407 ctccacaggttttcactttccttttctgtt-gtcctattagaattgggtcatcttgcttt 45758465  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 5533103 - 5533208
Alignment:
Q  141 ggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtact 240  Q
    |||| ||||||||||||| |||| |||||||| ||||||| || |||  || |||||||||   || |||||||||||  ||||| || |||||||||||    
T  5533103 ggccggatcttggggtgttcaaatcgctcaattgagctggaccaccctaagatatgggtct---aaaaaaaattatagtccagtactactactaagtact 5533199  T
Q  241 accccacta 249  Q
    |||||||||    
T  5533200 accccacta 5533208  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 1633890 - 1633823
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagc 219  Q
    |||||||||||||| | ||||||| | |||||||||| | ||||||||| ||  ||||||||||||||||    
T  1633890 ttggggtgtgcaaatcactcaatgaaactgggcctcctcaaggtatgggcct--aaataaaaattatagc 1633823  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 17322745 - 17322700
Alignment:
Q  153 gggtgtgcaaaccgctcaatggagctgggcctccccgaggtatggg 198  Q
    ||||||||||||||||||||||| | ||| |||||| |||||||||    
T  17322745 gggtgtgcaaaccgctcaatggaacggggtctccccaaggtatggg 17322700  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 50146106 - 50146147
Alignment:
Q  208 aaaaattatagctcagtagtattactaagtactaccccacta 249  Q
    |||||||||||| |||| ||| ||||||||||||||||||||    
T  50146106 aaaaattatagcccagtggtactactaagtactaccccacta 50146147  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 4036784 - 4036895
Alignment:
Q  136 agcagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaa 235  Q
    ||||||| | || ||||||||||||||| |||||||||||| ||||||||||| | ||||| | || |||  |||||||||||| |||||||| ||||||    
T  4036784 agcagggtcggaccttggggtgtgcaaaacgctcaatggagttgggcctccccaatgtatgagcctcaaa--aaaaattatagcccagtagtactactaa 4036881  T
Q  236 gtactaccccacta 249  Q
    |||||| |||||||    
T  4036882 gtactatcccacta 4036895  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 20611502 - 20611592
Alignment:
Q  136 agcagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagta 228  Q
    ||||||| | || |||||||||||||||  ||||||||||||||||||||||  ||||||||||||  ||| ||||| |||||||||||||||    
T  20611502 agcagggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatgggtct--aaaaaaaaaatatagctcagtagta 20611592  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 2477971 - 2477876
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactacccca 246  Q
    |||| |||||||||   |||||||| | | |||||||||| ||| |||||||| ||||  ||| ||||||| |||||||| |||||||||||||||||    
T  2477971 cttgaggtgtgcaaggagctcaatgcaaccgggcctccccaaggcatgggtctaaaaa--aaagttatagcccagtagtactactaagtactacccca 2477876  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 27131664 - 27131573
Alignment:
Q  157 gtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccacta 249  Q
    |||||||  |||||||||||||| |||||  | |||||||||||| | ||| ||| |||||| ||||||||| |  |||||||||||||||||    
T  27131664 gtgcaaaaagctcaatggagctgagcctcttcaaggtatgggtctcataat-aaatttatagttcagtagtactgttaagtactaccccacta 27131573  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 21183901 - 21183856
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtat 195  Q
    |||||||||||||||||||||||| |||| |||| |||| ||||||    
T  21183901 ttggggtgtgcaaaccgctcaatgaagcttggccaccccaaggtat 21183856  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 29694095 - 29694185
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactac 242  Q
    |||||||||||||||  |||||||||||||||||||||   ||||||||||||   || |||||||||||| || ||||| |||||||||||||    
T  29694095 cttggggtgtgcaaagagctcaatggagctgggcctccttaaggtatgggtct---aaaaaaaattatagcccactagtactactaagtactac 29694185  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 11953001 - 11952900
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtct-taaaataaaaattatagctcagtagtattactaagtactaccccac 247  Q
    ||||||||||||||   |||||||||| |||||||||||| ||||||| | ||  ||||||||| ||||||| | |||||| ||||||||||||| ||||    
T  11953001 cttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgagcctcaaaaataaaatttatagccctgtagtactactaagtactactccac 11952902  T
Q  248 ta 249  Q
    ||    
T  11952901 ta 11952900  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 10252125 - 10252227
Alignment:
Q  140 gggccagatcttggggtgtgcaaaccgctcaatggagctgggcct-ccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagta 238  Q
    ||||| ||||||||||||||||||  |||||| | || ||| ||| |||| ||||||||| || |||||||||||||||||  ||||||| |||||||||    
T  10252125 gggccggatcttggggtgtgcaaagagctcaacgtagttggaccttccccaaggtatgggcct-aaaataaaaattatagcctagtagtactactaagta 10252223  T
Q  239 ctac 242  Q
    ||||    
T  10252224 ctac 10252227  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 21190981 - 21190911
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagc 219  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||| || | || |||| |||||||    
T  21190981 cttggggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcctcataaaaaaatttatagc 21190911  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 30175530 - 30175600
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagc 219  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||| || | || |||| |||||||    
T  30175530 cttggggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcctcataaaaaaatttatagc 30175600  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 45156402 - 45156332
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagc 219  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||| || | || |||| |||||||    
T  45156402 cttggggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcctcataaaaaaatttatagc 45156332  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 28425935 - 28425846
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtct-taaaataaaaattatagctcagtagtattactaagt 237  Q
    ||||||||||||||||| ||||||||| |||| || |||| ||||||||| ||  |||| |||||||||||  |||||||| ||||||||    
T  28425935 cttggggtgtgcaaaccactcaatggaactggaccaccccaaggtatgggcctcaaaaaaaaaaattatagtccagtagtactactaagt 28425846  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 7742351 - 7742260
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtacta 241  Q
    ||||| |||||||||||||||||| || | |||||| ||| ||||||| | ||||||| |||||||||||   ||||||| ||||||||||||    
T  7742351 cttggagtgtgcaaaccgctcaatagaaccgggccttcccaaggtatgag-cttaaaaaaaaaattatagtctagtagtactactaagtacta 7742260  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 36949338 - 36949264
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagta 225  Q
    ||||||| |||||||| ||||||||||||||||||| ||| ||||| ||| ||  ||| |||||||||||| |||||    
T  36949338 cttggggggtgcaaacagctcaatggagctgggccttcccaaggtacgggcct--aaaaaaaaattatagcccagta 36949264  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 22788126 - 22788070
Alignment:
Q  155 gtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaa 211  Q
    |||||||||||||||||| || | |||||||||| ||| |||||||| |||||||||    
T  22788126 gtgtgcaaaccgctcaatagaaccgggcctccccaaggcatgggtctaaaaataaaa 22788070  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 21666088 - 21665991
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccact 248  Q
    ||||||||||||||   |||||||||| |||||||||||| ||||||||| || ||  |     ||||||||||| |||| ||||||| |||||||||||    
T  21666088 cttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgggcctaaattt---ttttatagctcagcagtactactaagcactaccccact 21665992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 37182371 - 37182429
Alignment:
Q  136 agcagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggta 194  Q
    ||||||| | || |||||||||||||||  ||||||||||||||| ||||||| |||||    
T  37182371 agcagggtcggaccttggggtgtgcaaagagctcaatggagctggacctccccaaggta 37182429  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 42027110 - 42027158
Alignment:
Q  138 cagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctcc 186  Q
    ||||||| || ||||||||||| ||||||||||||||||| | ||||||    
T  42027110 cagggccggaccttggggtgtgtaaaccgctcaatggagccgagcctcc 42027158  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 2025011 - 2024931
Alignment:
Q  166 gctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccacta 249  Q
    ||||||| || ||| |||||||| |||||||||||| ||||   |||||||||| |||||||| ||||||||||||||||||||    
T  2025011 gctcaatagaactgcgcctccccaaggtatgggtctaaaaa---aaattatagcccagtagtactactaagtactaccccacta 2024931  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 15639168 - 15639267
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccact 248  Q
    |||| |||||||||   |||||||||| ||||  |||||| ||||||||| || |||| |||||||||||  |||||||| |||||||||||||||||||    
T  15639168 cttgaggtgtgcaaggagctcaatggaactggagctccccaaggtatgggcctaaaaa-aaaaattatagtccagtagtactactaagtactaccccact 15639266  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 34425621 - 34425716
Alignment:
Q  153 gggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccacta 249  Q
    |||||||||||  ||||||| || ||||| || ||| ||||||| || | |||| |||| ||||||| |||||||||||||||||||||||||||||    
T  34425621 gggtgtgcaaagagctcaattgaactgggtcttcccaaggtatgagtttcaaaa-aaaatttatagcccagtagtattactaagtactaccccacta 34425716  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 2531108 - 2531023
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagta 238  Q
    ||||||||||||||||||| ||||||||| || |||| | ||||||| | ||   || ||||||||||| ||||||||| |||||||||    
T  2531108 ttggggtgtgcaaaccgcttaatggagctaggactcctcaaggtatgtgcct---aaaaaaaattatagttcagtagtactactaagta 2531023  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 10407322 - 10407369
Alignment:
Q  221 cagtagtattactaagtactaccccactatttcccaggtttccacttt 268  Q
    |||||||| ||||||||||| |||||||| ||| ||||||||||||||    
T  10407322 cagtagtactactaagtactgccccactacttctcaggtttccacttt 10407369  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 7078882 - 7078970
Alignment:
Q  157 gtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactacccca 246  Q
    |||||||| ||||||||||| |||  | || | ||||||||| || |||| ||||||||||||  | ||||| |||||||||||||||||    
T  7078882 gtgcaaactgctcaatggagttggatcacctcaaggtatgggcctcaaaa-aaaaattatagcataatagtactactaagtactacccca 7078970  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 24395445 - 24395505
Alignment:
Q  138 cagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatggg 198  Q
    ||||||| || ||| ||| |||||||  ||||||||||||| ||||||||| |||||||||    
T  24395445 cagggccggaccttagggcgtgcaaagagctcaatggagctaggcctccccaaggtatggg 24395505  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 26279259 - 26279353
Alignment:
Q  153 gggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccacta 249  Q
    ||||||||||   ||||| |||||||||||||||||  |||||| |||| ||||  |||||||||||||||||||| |||||| |||||| ||||||    
T  26279259 gggtgtgcaaggagctcactggagctgggcctccccagggtatgagtctaaaaa--aaaattatagctcagtagtactactaaatactactccacta 26279353  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 25855304 - 25855391
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagt 237  Q
    |||||||||||||||||| |||| || |||||||||||| ||||||||| || |||| || | ||||||| || ||||| ||||||||    
T  25855304 ttggggtgtgcaaaccgcccaatagaactgggcctccccaaggtatgggcctcaaaaaaagatttatagcacaatagtactactaagt 25855391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 23641517 - 23641451
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatag 218  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||| || |||  |||||||||||    
T  23641517 ttggggtgtgcaaaccgctcaatggaaccgggcctccccaaggtatgggcctcaaa--aaaaattatag 23641451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 49392945 - 49393002
Alignment:
Q  208 aaaaattatagctcagtagtattactaagtactaccccactatttcccaggtttccac 265  Q
    |||||||||||| |||||||| ||||||||||| |||||||  | |||||||||||||    
T  49392945 aaaaattatagcccagtagtactactaagtactgccccactcctccccaggtttccac 49393002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 8420180 - 8420240
Alignment:
Q  208 aaaaattatagctcagtagtattactaagtactaccccactatttcccaggtttccacttt 268  Q
    |||||||||||| || ||| | |||||||||||||||||||| |  |||||||||||||||    
T  8420180 aaaaattatagcccaataggactactaagtactaccccactactctccaggtttccacttt 8420240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 6937642 - 6937567
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtctta-aaataaaaattatagctcagt 224  Q
    |||||| |||||||  ||||||||||||||||||| ||| | |||||||||| | ||| |||||||||||| ||||    
T  6937642 ttggggggtgcaaatagctcaatggagctgggccttcccaatgtatgggtctcataaaaaaaaattatagcccagt 6937567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 8420138 - 8420175
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctcc 186  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  8420138 cttggggtgtgcaaaccactcaatggaactgggcctcc 8420175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 36180371 - 36180330
Alignment:
Q  155 gtgtgcaaaccgctcaatggagctgggcctccccgaggtatg 196  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    
T  36180371 gtgtgcaaaccgctcaatagagttgggcctccccaaggtatg 36180330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 39718578 - 39718674
Alignment:
Q  150 ttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactacccca 246  Q
    ||||||||| ||||  |||||||||||| || ||||||    |||||||  ||| || ||||||||||||||| ||||| || ||||||| ||||||    
T  39718578 ttggggtgttcaaagagctcaatggagccggacctccctatagtatgggctttagaaaaaaaattatagctcaatagtactattaagtacaacccca 39718674  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 36363268 - 36363160
Alignment:
Q  146 gatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtctta-----aaataaaaattatagctcagtagtattactaagtact 240  Q
    ||||||||||||  ||||  |||||||||||||| ||||| || |||||||| ||| |     ||| ||||||||||| ||||||||| |||||||||||    
T  36363268 gatcttggggtggacaaagagctcaatggagctgagcctctccaaggtatggatctcaggcaaaaaaaaaaattatagttcagtagtactactaagtact 36363169  T
Q  241 accccacta 249  Q
    |||||||||    
T  36363168 accccacta 36363160  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 15734799 - 15734910
Alignment:
Q  138 cagggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagt 237  Q
    ||||| |||| |||||| |||||||   ||| |||||| | || ||||||| ||||||||| || |||| |||||||||| |  ||||||| ||||||||    
T  15734799 cagggtcagaccttgggatgtgcaaggagctgaatggaaccggacctccccaaggtatgggcctcaaaaaaaaaattataaccaagtagtactactaagt 15734898  T
Q  238 actaccccacta 249  Q
    ||||||||||||    
T  15734899 actaccccacta 15734910  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 22076987 - 22077034
Alignment:
Q  137 gcagggccagatcttggggtgtgcaaaccgctcaatggagctgggcct 184  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||    
T  22076987 gcagggccggaccttggggtgtgcaaaccgctcaatggagctgggcct 22077034  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 22077036 - 22077102
Alignment:
Q  203 aaaataaaaattatagctcagtagtattactaagtactaccccactatttcccaggtttccactttt 269  Q
    |||| |||||||||||| |||||||  |||||| ||||||||||||| | || ||||||||||||||    
T  22077036 aaaaaaaaaattatagcccagtagtgctactaaatactaccccactactcccaaggtttccactttt 22077102  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 24404217 - 24404279
Alignment:
Q  157 gtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagc 219  Q
    |||||||| ||||||||||||||||||||||| ||||||||| || | || |||| |||||||    
T  24404217 gtgcaaacagctcaatggagctgggcctccccaaggtatgggcctcataaaaaaatttatagc 24404279  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 27111752 - 27111847
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactacccca 246  Q
    |||| |||||||||   |||||||| | | |||||||||| ||| |||||||| ||||  ||| ||||||| |||||||| |||||||||||||||||    
T  27111752 cttgaggtgtgcaaggagctcaatgcaaccgggcctccccaaggcatgggtctaaaaa--aaagttatagcccagtagtactactaagtactacccca 27111847  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 2135692 - 2135617
Alignment:
Q  168 tcaatggagctgggcctccccgaggtatgggtctt--aaaataaaaattatagctcagtagtattactaagtacta 241  Q
    |||||||||||||| || ||  |||||||||||||  |||| |||||||||||  |||||||| ||||||||||||    
T  2135692 tcaatggagctgggtcttcctaaggtatgggtcttaaaaaaaaaaaattatagtccagtagtactactaagtacta 2135617  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 22315854 - 22315787
Alignment:
Q  157 gtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagt 224  Q
    |||||||| ||||||||||||||| ||||||| ||||||| | || | || |||||||||||| ||||    
T  22315854 gtgcaaacagctcaatggagctggacctccccaaggtatgagcctcataaaaaaaattatagcccagt 22315787  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 30507378 - 30507288
Alignment:
Q  140 gggccagatcttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtcttaaaataaaaattatagctcagtagtattact 233  Q
    ||||| || ||||||||||||||||| |||||||||  ||||||||||| ||| ||||  ||   || |||||||||||| |||||||| ||||    
T  30507378 gggccggaccttggggtgtgcaaaccactcaatggaattgggcctccccaaggaatggacct---aaaaaaaattatagcgcagtagtactact 30507288  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 36118633 - 36118597
Alignment:
Q  269 ttcttttgggcctattagaattgggtcatcttacttt 305  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  36118633 ttcttttaggcctattagaattgggtcatcttgcttt 36118597  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 39916 - 39994
Alignment:
Q  190 aggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccactatttcccaggtttccacttt 268  Q
    ||||||||  || |||| |||||||||||   | ||||| ||||||||||||| |||||||| ||||||||||||||||    
T  39916 aggtatggacctcaaaaaaaaaattatagtctattagtactactaagtactactccactattccccaggtttccacttt 39994  T

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Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 137976 - 138054
Alignment:
Q  190 aggtatgggtcttaaaataaaaattatagctcagtagtattactaagtactaccccactatttcccaggtttccacttt 268  Q
    ||||||||  || |||| |||||||||||   | ||||| ||||||||||||| |||||||| ||||||||||||||||    
T  137976 aggtatggacctcaaaaaaaaaattatagtctattagtactactaagtactactccactattccccaggtttccacttt 138054  T

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Target: scaffold1320 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 1063 - 1166
Alignment:
Q  149 cttggggtgtgcaaaccgctcaatggagctgggcctccccgaggtatgggtctta-aaataaaaatt--atagctcagtagtattactaagtactacccc 245  Q
    ||||||||  |||||  ||||||||||| ||| ||||| | | ||||||| || | ||| |||||||  |||||||||| ||| ||||||||||||||||    
T  1063 cttggggtacgcaaagagctcaatggagttggacctcctcaaagtatgggcctcagaaaaaaaaattgtatagctcagtggtactactaagtactacccc 1162  T
Q  246 acta 249  Q
    ||||    
T  1163 acta 1166  T

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