View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20813_low_6 (Length: 322)
Name: NF20813_low_6
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20813_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 60 - 322
Target Start/End: Complemental strand, 29685483 - 29685221
Alignment:
| Q |
60 |
tactttaattttgaaaatataaatatacatcataattctttccnnnnnnntatacttcataattattctcttgtgattccgcgttcagtttttaataata |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29685483 |
tactttaattttgaaaatataaatatacatcataattctttccaaaaaaatatacttcataattattctcttgtgattccgcgttcagtttttaataata |
29685384 |
T |
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| Q |
160 |
ttcattgtggataaaactttttcaacaattatagttgtcacacaaacacacacagaaaactctaaaagaaaatatatcaatgagtgaacaacatattttc |
259 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29685383 |
ttcattgtggagaaaactctttcaacaattatagttgtcacacatacacacacagaaaactctaaaaggaaatatatcaatgagtgaacaacatattttc |
29685284 |
T |
|
| Q |
260 |
ttgtctccactaacgttatagaaaagattgttatgtacataaaataagaaaatactaacaaac |
322 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29685283 |
ttgtctccactaatgttatagaaaagattgttatgtacataaaataagaaaatactaacaaac |
29685221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 60 - 320
Target Start/End: Complemental strand, 29688635 - 29688354
Alignment:
| Q |
60 |
tactttaattttgaaaatataaatatacatcataattctttccnnnnnnnta--tacttcataattattctcttgtgattccgcgttcagtttttaataa |
157 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||| | || ||||||||| |||||||| |||| || ||||||| ||||||| |
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| T |
29688635 |
tactttaattttgaaaacataaatttacatcataattctttccaaaaaaaaaaatatttcataattgttctcttggcattctgcattcagttcttaataa |
29688536 |
T |
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| Q |
158 |
tattcattgtggataaaactttttcaacaattatagttgtcacacaaacacacacagaaa--------------------actctaaaagaaaatatatc |
237 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| | | |||||||||| ||||||||| |
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| T |
29688535 |
tattcattgtggagaaaactctttcaacaattatagttgtcacacacacacacacatatatatatatatatatattaagaactctaaaaggaaatatatc |
29688436 |
T |
|
| Q |
238 |
aatgagtgaacaacatattttcttgtctccactaacgttatagaaaagattgttatgtacataaaataagaaaatactaacaa |
320 |
Q |
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| T |
29688435 |
aatgagtgaacaacatatttccttgtctccactaacgttatag-aaatattgttatgtatataaaataagaaaatgctaacaa |
29688354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 37647120 - 37647264
Alignment:
| Q |
60 |
tactttaattttgaaaatataaatatacatcataattctttccnnnnnnn-tatacttcataattattctcttgtgattccgcgttcagtttttaataat |
158 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |
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| T |
37647120 |
tactttaattttgaaaacataaatatacatcataattctttccataaaaaatatacttcataattgttctcttggaattccgcgttcggttcttaataat |
37647219 |
T |
|
| Q |
159 |
attcattgtggataaaactttttcaacaattatagttgtcacaca |
203 |
Q |
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|||| | ||||| |||||| ||||||||||||||||||||||||| |
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| T |
37647220 |
attcgtcgtggagaaaactctttcaacaattatagttgtcacaca |
37647264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 6606637 - 6606728
Alignment:
| Q |
110 |
tatacttcataattattctcttgtgattccgcgttcagtttttaataatattcattgtggataaaactttttcaacaattatagttgtcaca |
201 |
Q |
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|||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| | ||||| |||||| |||||||||||||||| |
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| T |
6606637 |
tatatttcataattgttctcttgtgatttcgcgttcagttcttaataatattcattgtgcagaaaacactttcaataattatagttgtcaca |
6606728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 322
Target Start/End: Original strand, 6606790 - 6606893
Alignment:
| Q |
217 |
aactctaaaagaaaatatatcaatgagtgaacaacatattttcttgtctccactaacgttatagaaaagattgttatgtacat-aaaataagaaaatact |
315 |
Q |
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||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||| ||||||| |||||| ||||||| || ||||||||||||| || |
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| T |
6606790 |
aactctaaaagcaaatataccaatgagtacacaacatattttcttgtcttcactaatgttatag-aaagat--ttatgtatataaaaataagaaaatcct |
6606886 |
T |
|
| Q |
316 |
aacaaac |
322 |
Q |
| |
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|| |||| |
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| T |
6606887 |
aataaac |
6606893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 1433865 - 1433824
Alignment:
| Q |
60 |
tactttaattttgaaaatataaatatacatcataattctttc |
101 |
Q |
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| T |
1433865 |
tactttaattttgaaaatataaattcacatcataattctttc |
1433824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 44039577 - 44039510
Alignment:
| Q |
110 |
tatacttcataattattctcttgtgattccgcgttcagtttttaataatattcattgtggataaaact |
177 |
Q |
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|||| ||||||||| |||||||| |||| | ||||| ||| |||||||||||||||||||| |||||| |
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| T |
44039577 |
tataattcataattgttctcttgcgatttcacgttcggttcttaataatattcattgtggagaaaact |
44039510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 5256830 - 5256762
Alignment:
| Q |
63 |
tttaattttgaaaatataaatatacatcataattctttccnnnnnnntatacttcataattattctctt |
131 |
Q |
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|||||||||||||| |||||||||||| |||||| ||||| |||||||||||||| ||||||| |
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| T |
5256830 |
tttaattttgaaaacataaatatacattataattgtttccaaaaaaatatacttcataattgttctctt |
5256762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 21098781 - 21098740
Alignment:
| Q |
61 |
actttaattttgaaaatataaatatacatcataattctttcc |
102 |
Q |
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|||||||||||||||| ||||||||||||| || |||||||| |
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| T |
21098781 |
actttaattttgaaaacataaatatacatcgtagttctttcc |
21098740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 24747493 - 24747529
Alignment:
| Q |
60 |
tactttaattttgaaaatataaatatacatcataatt |
96 |
Q |
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||||||||||||||||| ||||||||| ||||||||| |
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| T |
24747493 |
tactttaattttgaaaacataaatatagatcataatt |
24747529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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