View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20813_low_7 (Length: 318)

Name: NF20813_low_7
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20813_low_7
NF20813_low_7
[»] chr4 (1 HSPs)
chr4 (18-308)||(51755925-51756221)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 51756221 - 51755925
Alignment:
Q  18 atttgattcctccatttgcaaaggaagcaaactcgaaatcttcatcccaaaacctaacaacgttgccattaatcaccgttaaatcttggcatgtatacca 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51756221 atttgattcctccatttgcaaaggaagcaaactcgaactcttcatcccaaaacctaacaacgttgccgttaatcaccgttaaatcttggcatgtatacca 51756122  T
Q  118 cccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttann 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  51756121 cccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttatt 51756022  T
Q  218 nnnnnnaacgtctcaacactttccttgcattctctgtcaatgtcatcttcatc------gtcataataatacaaggtaaacttcatctttccctttg 308  Q
          |||||||||||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  51756021 ttttttaacgtctcaacactctccttgcattctctgtcaatgtcatcttcatcttcatggtcataataatacaaggtaaacttcatctttccctttg 51755925  T

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