View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20813_low_9 (Length: 296)
Name: NF20813_low_9
Description: NF20813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20813_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 107 - 282
Target Start/End: Original strand, 35474675 - 35474850
Alignment:
| Q |
107 |
attttaaccgttgtgcattatgatatgtaggtggagatgtttcaagtggaggaaagaggttattatgcaaaaatattgtgcaataaaggagaaggagtag |
206 |
Q |
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| T |
35474675 |
attttaaccgttgtgcattatgatatgtaggtggagatgtttcaagtggaggaaagaggttattatgcaaaaatattgtgcaataaaggagaaggagtag |
35474774 |
T |
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| Q |
207 |
ctgcttcattgtacaaggctcttgagtctcttgcaaatttcaatgtccaaaactcaaacttagctacagtttgtga |
282 |
Q |
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| T |
35474775 |
ctgcttcattgtacaaggctcttgagtctcttgcaaatttcaatgtccaaaactcaaacttagctacagtttgtga |
35474850 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 35474617 - 35474674
Alignment:
| Q |
9 |
aacagagatagataaaatagaaaactacaaacaaatgacatcgtatataggtggaaca |
66 |
Q |
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| T |
35474617 |
aacagagacagataaaatagaaaactacaaacaaatgacgtcgtatataggcggaaca |
35474674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 20951173 - 20951085
Alignment:
| Q |
143 |
atgtttcaagtggaggaaagaggttattatgcaaaaatattgtgcaataaaggagaaggagtagctgcttcattgtacaaggctcttga |
231 |
Q |
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| T |
20951173 |
atgtttcaagtagatgaaagagggttttatgttaaaatagtatgcaataagggagaaagggtggctgcttcattatacaagtctcttga |
20951085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 3537770 - 3537869
Alignment:
| Q |
135 |
aggtggagatgtttcaagtggaggaaagaggttattatgcaaa-aatattgtgcaataaaggagaaggagtagctgcttcattgtacaaggctcttgagt |
233 |
Q |
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| T |
3537770 |
aggtggacatgtttgaagtggaggaaagaaggcattatgaaaatagtagtgtgcaat-taggataaggagtatctgctt-tttgtacaaggctcttgagt |
3537867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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