View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20814_high_1 (Length: 677)
Name: NF20814_high_1
Description: NF20814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20814_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 24916002 - 24915691
Alignment:
| Q |
10 |
attattctagttacattgattctgacattagttactccactatttgtaagtgaccttaactcagcctgtaaacttggtaaaaaatactgatgcggctact |
109 |
Q |
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| T |
24916002 |
attattctagttacattgattctgacattagttactccactatttgtaagtgaccttaactcagcctgtaaactaggtaaaaaatactgatgcggctact |
24915903 |
T |
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| Q |
110 |
agaattgaccaaatgacatgttctcagtgaccctttcggaaacaaaagcctcttgttacaaatcattgttatcttcaaacattgatttaggtagtctatt |
209 |
Q |
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| T |
24915902 |
agaattgaccaaatgacatgttctcagtgacccttt---------------------acatatcattgttatcttcaaacattgatttaggtagtctatt |
24915824 |
T |
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| Q |
210 |
ctaacaacaaagcagttgtttaattagtgaagagaaaatattttatgatctcaatgcacaagcagcacacacgtaaacttgcacaagcagtcacaattca |
309 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24915823 |
ctaacaacaaagtagttgtttaattagtgaagagaaaatattttatgatctcaatgcacaagcagcacacacgtaaacttgcacaagcagtcacaattca |
24915724 |
T |
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| Q |
310 |
caagcgacatacaaataaacatgcacaagcagt |
342 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
24915723 |
caagcgacacacaaataaacatgcacaagcagt |
24915691 |
T |
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