View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20814_high_3 (Length: 504)
Name: NF20814_high_3
Description: NF20814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20814_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 12920003 - 12919514
Alignment:
| Q |
18 |
ttcaactcgtatgaagcccatcaaattattaacattccaatctcgtggaggctaccagaggataaaaggattttgcattgggaaagaaatggtaattact |
117 |
Q |
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| T |
12920003 |
ttcaactcgtatgaagcccatcaaattattaacattccaatctcgtggagactactagaggataaaaggattttgcattgggaaagaaatggtaattact |
12919904 |
T |
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| Q |
118 |
ctgtgcgttcggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttcttctatgattgaccaaaggctttggagagcagtctggaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||| |
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| T |
12919903 |
ctgtgcgttcggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttcatctttgagtgaccaaaggctttggagagcagactggaa |
12919804 |
T |
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| Q |
218 |
aatgcatgctccaaactgt-----actagaaactttttgtggcgactggcccgcgacattctgccaaccagagggcgactggaacaaaaaggcgtgaatc |
312 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
12919803 |
aatgcatgctccaaacaggctaggactagaaactttttgtggcgactggcccgcaacattctgccaaccagaggccgactggaacaaaaaggcgtgattc |
12919704 |
T |
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| Q |
313 |
ttgatcctgtatgccttttgtgcttctctgaaacagaaactactgaacaccttttcatgagatgcccaatggtataacaactttggtttatttcagctct |
412 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||| || |
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| T |
12919703 |
ttgatcctgtatgccctttatgcttctctgaaacagaaactactgaacaccttttaatgagatgtccaatggtacaacaactttggtttattttagccct |
12919604 |
T |
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| Q |
413 |
tggcattcatattccacaaattgtgaagctagcacagtggcttcaacaatggatcacaaacccagataaggtggctagtcatttatccag |
502 |
Q |
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| T |
12919603 |
tggcattcatattctacaacatgtgaggctagcacagtggcttcaacaatggatcataaacccagataaggtggctagtcatttatccag |
12919514 |
T |
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