View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20814_high_4 (Length: 454)
Name: NF20814_high_4
Description: NF20814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20814_high_4 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 27443 - 27879
Alignment:
| Q |
9 |
aaatgaataaaaggaatcttcagaatcatgaatttgtttctaattttatatnnnnnnnnnngaagagagaaatatgtctctaatttaatcatcatatgca |
108 |
Q |
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| T |
27443 |
aaatgaataaaaggaattttcagaatcatgaatttgtttctaattttatataaaaaaagaagaagagagaaatatgtctctaatttaatcatcatatgca |
27542 |
T |
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| Q |
109 |
tacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtagttaaactttgtgtccagatcca |
208 |
Q |
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| T |
27543 |
tacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtagttaaactgtgtgtccagatcca |
27642 |
T |
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| Q |
209 |
acagtttgaaggaataagaccacgcagctgcttatcagggacctgagcatatgagtaagcctggc------actgtggacacatcccatggcacaaatct |
302 |
Q |
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| T |
27643 |
acagtttgaaggaataagaccacgctgctgcttatcagggacttgagcatatgagtaagcctggcactgtgactgtggacacatcccatggcacaaatct |
27742 |
T |
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| Q |
303 |
gcgca-nnnnnnngagattccacggttgcctttttatctggctttcctgttttaatcatggtcaagttcaagaacttcatgtcattttcagaacagaatg |
401 |
Q |
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| T |
27743 |
gcgcattttttttgagattccacggttacctttatatctggccttcctgttttaatcatggtcaagttcaagaacttcgtgtcattttcagtacagaatg |
27842 |
T |
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| Q |
402 |
ttgtttttctcctcgtacaatgtcgtgaagaatcttc |
438 |
Q |
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| T |
27843 |
ttgtttttctcctcgtacaatgtcgtgaagaatcttc |
27879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 2485 - 2617
Alignment:
| Q |
87 |
tctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtag |
186 |
Q |
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|||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
2485 |
tctaatttaatcatcacatgcatacctacctctgatttatcaactaggacaatgagtctacgatcataatcccaattagtatactcttctttaagagtag |
2584 |
T |
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| Q |
187 |
ttaaactttgtgtccagatccaacagtttgaag |
219 |
Q |
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| T |
2585 |
ttaaactttgtgtccagatccaacaatttgaag |
2617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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