View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20814_low_6 (Length: 326)
Name: NF20814_low_6
Description: NF20814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20814_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 34590465 - 34590746
Alignment:
| Q |
34 |
caggggcggttccacctcttagtgagggggtgcacctgcacaccctagaattttaaaaattactgcaattatacaagttaaattgcacttgcacaccctg |
133 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
34590465 |
caggggcggttccacctcttagtgagggcgtgcacctacacaccctagaattttaaaaattactgcaattatataagttaaattgcacttgcacatcctg |
34590564 |
T |
|
| Q |
134 |
gattatatgtcttgcaccaacacaaatttaatccaaagattttgcactcaacaaatgctttttgtctcacctgacacggaacaggcgttgcacatacaac |
233 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34590565 |
gattatatgtcttgcaccaacacaagtttaatctaaagattttgcattcaacaaatgctttttgtctcacctgacacggaacaggcgttgcacatacaat |
34590664 |
T |
|
| Q |
234 |
atttttcacttctctaccgtcagcacttagcttttggtttgttcaagatgaatttagattaccttttacccactattttcat |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34590665 |
atttttcacttctctactgtcagcacttagcttttggtttgttcaagatgaatttagattaccttttacccactattttcat |
34590746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 53517357 - 53517413
Alignment:
| Q |
34 |
caggggcggttccacctcttagtgagggggtgcacctgcacaccctagaattttaaa |
90 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
53517357 |
caggggcggagccacctcttagtgagggtgtgcacctgcatcccctgaaattttaaa |
53517413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 32692326 - 32692607
Alignment:
| Q |
34 |
caggggcggttccacctcttagtgagggggtgcacctgcacaccctagaattttaaaaattactgcaattatacaagttaaattgcacttgcacaccctg |
133 |
Q |
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| T |
32692326 |
caggggcgggtccacttcttagtgagggggtgcacctgcacaccctagaattttaaaaattattgcaattatactagttaaattgcacttgcacacccta |
32692425 |
T |
|
| Q |
134 |
gattatatgtcttgcaccaacacaaatttaatccaaagattttgcactcaacaaatgctttttgtctcacctgacacggaacaggcgttgcacatacaac |
233 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32692426 |
gattatatgtcttgcaccaacacaagtttaatccaaagattttgcactcaacaaatactttttgtctcacctgacacggatcaggcgttgcacatacaac |
32692525 |
T |
|
| Q |
234 |
atttttcacttctctaccgtcagcacttagcttttggtttgttcaagatgaatttagattaccttttacccactattttcat |
315 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32692526 |
atttttcacttctctagtgtcagcacttagtttttggtttgttcaagatgaatttagattaccttttacccactattttcat |
32692607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 31 - 312
Target Start/End: Original strand, 24762084 - 24762365
Alignment:
| Q |
31 |
tagcaggggcggttccacctcttagtgagggggtgcacctgcacaccctagaattttaaaaattactgcaattatacaagttaaattgcacttgcacacc |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||| ||||| |||||||||||| ||||||||| |
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| T |
24762084 |
tagcaggggtggttccacctcttagtgagggggtgcacctgcacacaatgggattttaaaaattacagcaagtatactagttaaattgcaattgcacacc |
24762183 |
T |
|
| Q |
131 |
ctggattatatgtcttgcaccaacacaaatttaatccaaagattttgcactcaacaaatgctttttgtctcacctgacacggaacaggcgttgcacatac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24762184 |
ctggattatatgtcttgcaccaacacaagtttaatccaaagattttgcactcaaccaatgctttttgtctcacctgacacggaacagacgttgcacatac |
24762283 |
T |
|
| Q |
231 |
aacatttttcacttctctaccgtcagcacttagcttttggtttgttcaagatgaatttagattaccttttacccactatttt |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
24762284 |
aacatttttcacttctctactgtcagcacttagattttggtttgatcaagatgaatttagatttccttttacccactatttt |
24762365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 135 - 312
Target Start/End: Complemental strand, 24765966 - 24765789
Alignment:
| Q |
135 |
attatatgtcttgcaccaacacaaatttaatccaaagattttgcactcaacaaatgctttttgtctcacctgacacggaacaggcgttgcacatacaaca |
234 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
24765966 |
attatatgtcttgcaccaacacaagtttaatccaaagattttgcactcaaccaatgctttttgtctcacctgacacggaacagacgttgcacttacaaca |
24765867 |
T |
|
| Q |
235 |
tttttcacttctctaccgtcagcacttagcttttggtttgttcaagatgaatttagattaccttttacccactatttt |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24765866 |
tttttcacttctctactatcagcacttagcttttggtttgttcaagatgaatttagatttccttttacccactatttt |
24765789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 24766032 - 24765961
Alignment:
| Q |
34 |
caggggcggttccacctcttagtgagggggtgcacctgcacaccctagaattttaaaaattactgcaattata |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| ||| | |||||||||||||||||||||||| |
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| T |
24766032 |
caggggcggttccac-tcttagtgagggggtgaacctgcataccttgagattttaaaaattactgcaattata |
24765961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 21871638 - 21871592
Alignment:
| Q |
33 |
gcaggggcggttccacctcttagtgagggggtgcacctgcacaccct |
79 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||| |||| |
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| T |
21871638 |
gcaggggcggagccacctcttagtgagggtgtgcacctgcaccccct |
21871592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 4806307 - 4806381
Alignment:
| Q |
18 |
attcttgtgtcggtagcaggggcggttccacctcttagtgagggggtgcacctgcacaccctagaattttaaaaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4806307 |
attcttgtgtcggtagcaggggcggttccacctcttagtgagggggtgcacctgcacaccctagaattttaaaaa |
4806381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 8292367 - 8292323
Alignment:
| Q |
35 |
aggggcggttccacctcttagtgagggggtgcacctgcacaccct |
79 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||| |||| |
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|
| T |
8292367 |
aggggcggagccacctcttagtgagggtgtgcacctgcaccccct |
8292323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 34828041 - 34828001
Alignment:
| Q |
34 |
caggggcggttccacctcttagtgagggggtgcacctgcac |
74 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
34828041 |
caggggcggagccacctcttagtgagggtgtgcacctgcac |
34828001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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