View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20814_low_8 (Length: 307)
Name: NF20814_low_8
Description: NF20814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20814_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 10848452 - 10848172
Alignment:
| Q |
18 |
taaacaaagcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctgttaataacttgacatccactgccatcttctt |
117 |
Q |
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| T |
10848452 |
taaacaaagcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaataacttgacatccactgccatcttctt |
10848353 |
T |
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| Q |
118 |
tgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttcatgtggccttcatcatcttgaaactcctccgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10848352 |
tgcttttctccctagtctatgtctgttcctcaggtaatgaaataaaccactggaaaaccttgtcttcgtgtggccttcatcatcttgaaactcctccgtt |
10848253 |
T |
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| Q |
218 |
tcagttctagttttatccactttctgaagccaagctgcaacattactttcggttattcctagattatcctcagcttcatct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10848252 |
tcagttctagttttatccactttctgaagccaagctgcaacattactttcggttattcctagattatcctcagcttcatct |
10848172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 10879845 - 10879568
Alignment:
| Q |
18 |
taaacaaagcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctgttaataacttgacatccactgccatcttctt |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
10879845 |
taaacaaagcaacatgcatagatgttggcttttgctgataggaaactccatcaaacttc---tcgtctattaataacttgacatccactgccatcttctt |
10879749 |
T |
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| Q |
118 |
tgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttcatgtggccttcatcatcttgaaactcctccgtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
10879748 |
tgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttcgcatggcctttatcatcttgaaacttctccgtt |
10879649 |
T |
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| Q |
218 |
tcagttctagttttatccactttctgaagccaagctgcaacattactttcggttattcctagattatcctcagcttcatct |
298 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10879648 |
tcagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagctttatct |
10879568 |
T |
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