View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20815_low_2 (Length: 279)
Name: NF20815_low_2
Description: NF20815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20815_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 41349821 - 41349566
Alignment:
| Q |
15 |
aatcatctggttacgcactgttaacaacaacttgttatattggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaat |
114 |
Q |
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| T |
41349821 |
aatcatctggttacgcactgttaacaacaacttgttatattggtatgggagacacagttacagaggacatattcaaatgggtatcaaatgagtcaaaaat |
41349722 |
T |
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| Q |
115 |
tattaatgctgctattgtcctttgcaggataatgaatgatattgtatccaatgaggnnnnnnnnnnnnnnnnna---agcatttcaaagtttcttctttg |
211 |
Q |
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| T |
41349721 |
tattaatgctgctattgtcctttgcaggataatggatgatattgtatccaacgaggtatatatatatatatatatataacatttcaaactatcttctttg |
41349622 |
T |
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| Q |
212 |
caatatattttgtttttattcaaatgatgtgaacatttacatgaagtattatttttg |
268 |
Q |
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| T |
41349621 |
caatata-tttgtttttattcaaatgatgtgaacatttacatgaagtattatttttg |
41349566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 31201276 - 31201406
Alignment:
| Q |
40 |
aacaacttgttatattggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaattattaatgctgctattgtcctttgc |
139 |
Q |
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| T |
31201276 |
aacaacttgttatattggaatgggagacatagccacagaggacatcttcaagtgggtatcaaatgatccaaaagttattaatgctgcaattatcattgga |
31201375 |
T |
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| Q |
140 |
aggataatgaatgatattgtatccaatgagg |
170 |
Q |
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| T |
31201376 |
aggttaatggatgacattgtgtccaatgagg |
31201406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 31161485 - 31161602
Alignment:
| Q |
53 |
attggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaattattaatgctgctattgtcctttgcaggataatgaatg |
152 |
Q |
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| T |
31161485 |
attggcatgggagacataaccacagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatg |
31161584 |
T |
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| Q |
153 |
atattgtatccaatgagg |
170 |
Q |
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| T |
31161585 |
acattgcatccaatgagg |
31161602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 25793935 - 25794090
Alignment:
| Q |
15 |
aatcatctggttacgcactgttaacaacaacttgttatattggtatgggagacacaattacagaggacatattcaagtgggtatcaaatgagccaaaaat |
114 |
Q |
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| T |
25793935 |
aatcatctggttatgcactggtgaccacaacttcttacattggtatgggagccacagccacagaagacatcttcaagtggatatcaaatgagccaaaaat |
25794034 |
T |
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| Q |
115 |
tattaatgctgctattgtcctttgcaggataatgaatgatattgtatccaatgagg |
170 |
Q |
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| T |
25794035 |
tcttaatgcttctgttgtactttgcaggctaatggatgacattgtgtccaatgagg |
25794090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 4314915 - 4314831
Alignment:
| Q |
86 |
ttcaagtgggtatcaaatgagccaaaaattattaatgctgctattgtcctttgcaggataatgaatgatattgtatccaatgagg |
170 |
Q |
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| T |
4314915 |
ttcaagtgggtatcaaatggaataaaaatgatcaatgctgctattatcctttgcaggctaatggatgatattgcatccaacgagg |
4314831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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