View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_high_104 (Length: 228)

Name: NF20816_high_104
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_high_104
NF20816_high_104
[»] chr8 (8 HSPs)
chr8 (1-224)||(40512576-40512808)
chr8 (68-115)||(574376-574423)
chr8 (68-115)||(6038297-6038344)
chr8 (73-108)||(39201447-39201482)
chr8 (68-101)||(3757979-3758012)
chr8 (68-109)||(24195247-24195288)
chr8 (68-96)||(18422475-18422503)
chr8 (67-107)||(33445570-33445610)
[»] chr4 (10 HSPs)
chr4 (68-109)||(27655729-27655770)
chr4 (67-107)||(41346756-41346796)
chr4 (68-102)||(20403190-20403224)
chr4 (68-109)||(7282555-7282596)
chr4 (68-109)||(27871400-27871441)
chr4 (68-109)||(52936639-52936680)
chr4 (67-107)||(14136091-14136131)
chr4 (67-107)||(25999397-25999437)
chr4 (67-107)||(35151457-35151497)
chr4 (68-108)||(42756128-42756168)
[»] chr7 (8 HSPs)
chr7 (68-114)||(43539126-43539172)
chr7 (68-114)||(8318834-8318880)
chr7 (67-116)||(964762-964811)
chr7 (68-101)||(29734812-29734845)
chr7 (68-101)||(37307896-37307929)
chr7 (66-107)||(45914401-45914442)
chr7 (67-107)||(2391007-2391047)
chr7 (68-104)||(27908742-27908778)
[»] chr1 (9 HSPs)
chr1 (68-113)||(13401591-13401636)
chr1 (67-115)||(50372382-50372430)
chr1 (68-106)||(13779579-13779617)
chr1 (68-101)||(3528491-3528524)
chr1 (68-109)||(12213991-12214032)
chr1 (66-102)||(14392-14428)
chr1 (71-107)||(6818943-6818979)
chr1 (67-107)||(32030926-32030966)
chr1 (68-104)||(50533074-50533110)
[»] chr2 (9 HSPs)
chr2 (67-107)||(30243250-30243290)
chr2 (68-107)||(22571887-22571926)
chr2 (68-113)||(23782861-23782906)
chr2 (67-107)||(9459078-9459118)
chr2 (68-96)||(29896316-29896344)
chr2 (67-107)||(30089049-30089089)
chr2 (67-107)||(30125653-30125693)
chr2 (68-108)||(30799110-30799150)
chr2 (68-104)||(37984358-37984394)
[»] scaffold0350 (1 HSPs)
scaffold0350 (68-115)||(1240-1287)
[»] chr3 (6 HSPs)
chr3 (68-107)||(33223868-33223907)
chr3 (68-114)||(25441522-25441568)
chr3 (67-108)||(1501449-1501490)
chr3 (67-120)||(12131694-12131747)
chr3 (68-109)||(25289335-25289376)
chr3 (68-113)||(31214628-31214673)
[»] chr6 (2 HSPs)
chr6 (69-107)||(19277574-19277612)
chr6 (68-108)||(14945535-14945575)
[»] chr5 (3 HSPs)
chr5 (68-102)||(29962363-29962397)
chr5 (68-102)||(30012401-30012435)
chr5 (67-104)||(3416582-3416619)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40512576 - 40512808
Alignment:
Q  1 taaaaaacataagtgaaggatgatagatttaaacaccaacaggttgtatattttttatggtggtct---------tatatattatgcattgtttctatca 91  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| ||||| |||| ||    
T  40512576 taaagaacataagtgaaggatgatagatttaaacaccaacaggttgtatattttttatggtggtctcataccttgtatatattatgtattgtctctacca 40512675  T
Q  92 actgagctaagttcacaaagacattaacaacagtttacatatgaaattaaatcaagataccacgacacaagagtaattttgtcttattattctgtcttaa 191  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  40512676 actgagttaagctcacaaagacactaacaacagtttacatatgaaattaaattaagataccacgacacgagagtaattttgtcttattattctgtcttaa 40512775  T
Q  192 acgcttggttattcttagacatacgaagatcgc 224  Q
     ||||||||||||||||||||||||||||||||    
T  40512776 gcgcttggttattcttagacatacgaagatcgc 40512808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 574423 - 574376
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagacat 115  Q
    |||||||||||||||| | |||||||||||||||| |||||| |||||    
T  574423 atatattatgcattgtctatatcaactgagctaagctcacaaggacat 574376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 6038297 - 6038344
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagacat 115  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  6038297 atatattatgcattgtccatatcaactgagctaagttcacgaagacat 6038344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 39201482 - 39201447
Alignment:
Q  73 ttatgcattgtttctatcaactgagctaagttcaca 108  Q
    |||||||||||||||||||||||||||||| |||||    
T  39201482 ttatgcattgtttctatcaactgagctaagatcaca 39201447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 3757979 - 3758012
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaa 101  Q
    ||||||||||||||||| ||||||||||||||||    
T  3757979 atatattatgcattgttcctatcaactgagctaa 3758012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 24195288 - 24195247
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaa 109  Q
    |||||||||| ||||||  |||||||||||||||||||||||    
T  24195288 atatattatgtattgttcatatcaactgagctaagttcacaa 24195247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 18422475 - 18422503
Alignment:
Q  68 atatattatgcattgtttctatcaactga 96  Q
    |||||||||||||||||||||||||||||    
T  18422475 atatattatgcattgtttctatcaactga 18422503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 33445610 - 33445570
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  33445610 tatatattatgcattgttcctaccaactgagctaagctcac 33445570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 27655770 - 27655729
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaa 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27655770 atatattatgcattgtttctatcaactgaactaagttcacaa 27655729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 41346796 - 41346756
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  41346796 tatatattatgcattgtttctatcaattgagttaagttcac 41346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 20403190 - 20403224
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaag 102  Q
    ||||||||||||||||| |||||||||||||||||    
T  20403190 atatattatgcattgttcctatcaactgagctaag 20403224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 7282596 - 7282555
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaa 109  Q
    |||||||||||||||||  || ||||||||||||||||||||    
T  7282596 atatattatgcattgttcataccaactgagctaagttcacaa 7282555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 27871400 - 27871441
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaa 109  Q
    ||||||||| |||||| |||||||| ||||||||||||||||    
T  27871400 atatattatacattgtctctatcaaatgagctaagttcacaa 27871441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 52936680 - 52936639
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaa 109  Q
    ||||||||| |||||||||||||||||||| |||| ||||||    
T  52936680 atatattatacattgtttctatcaactgagttaagctcacaa 52936639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 14136131 - 14136091
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  14136131 tatatattatgcattgtctttatcaactgagctaagctcac 14136091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 25999437 - 25999397
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  25999437 tatatattatgcattgtccctaccaactgagctaagttcac 25999397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 35151497 - 35151457
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  35151497 tatattttatgcattgtttatataaactgagctaagttcac 35151457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 42756128 - 42756168
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcaca 108  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  42756128 atatattatgcattgtccttatcaactgagctaagttcaca 42756168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 43539126 - 43539172
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagaca 114  Q
    ||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  43539126 atatattatgcattgttcctatcaactgagctaagctcacaaggaca 43539172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 8318880 - 8318834
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagaca 114  Q
    |||| ||||||||||||||||||||||||| |||| ||||| |||||    
T  8318880 atatgttatgcattgtttctatcaactgagttaagctcacagagaca 8318834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 964762 - 964811
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcacaaagacatt 116  Q
    |||||||||||||||||||||||| |||||| |||| |||| | ||||||    
T  964762 tatatattatgcattgtttctatcgactgagttaagctcacgaggacatt 964811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 29734812 - 29734845
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaa 101  Q
    ||||||||||||||||||||||| ||||||||||    
T  29734812 atatattatgcattgtttctatcgactgagctaa 29734845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 37307896 - 37307929
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaa 101  Q
    ||||||||||||||||| ||||||||||||||||    
T  37307896 atatattatgcattgttcctatcaactgagctaa 37307929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 45914401 - 45914442
Alignment:
Q  66 ttatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||| |||||||||| | ||||||||||    
T  45914401 ttatatattatgcattgtctctatcaactaaactaagttcac 45914442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 2391047 - 2391007
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  2391047 tatatattatgcattgttcttaccaactgagctaagttcac 2391007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 27908742 - 27908778
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagtt 104  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  27908742 atatattaagcattgtttctatcaactgagttaagtt 27908778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 13401636 - 13401591
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagac 113  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||    
T  13401636 atatattatgcattgtctctatcaactgaactaagctcacaaagac 13401591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 50372382 - 50372430
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcacaaagacat 115  Q
    ||||||||||||||||||| |||||||||||||||| || ||| |||||    
T  50372382 tatatattatgcattgtttatatcaactgagctaagctcgcaatgacat 50372430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 13779617 - 13779579
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttca 106  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  13779617 atatattatgcattgtctatatcaactgagctaagttca 13779579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 3528491 - 3528524
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaa 101  Q
    ||||||||| ||||||||||||||||||||||||    
T  3528491 atatattatacattgtttctatcaactgagctaa 3528524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 12214032 - 12213991
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaa 109  Q
    |||||||||| |||||| ||||||||||||||||| ||||||    
T  12214032 atatattatgtattgttcctatcaactgagctaagctcacaa 12213991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 14428 - 14392
Alignment:
Q  66 ttatatattatgcattgtttctatcaactgagctaag 102  Q
    |||||||||||||||||||| || |||||||||||||    
T  14428 ttatatattatgcattgtttataccaactgagctaag 14392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 6818979 - 6818943
Alignment:
Q  71 tattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  6818979 tattatgcattgtttctatcaactgagcaaagctcac 6818943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 32030926 - 32030966
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  32030926 tatatattatgcattgtccctaacaactgagctaagttcac 32030966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 50533110 - 50533074
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagtt 104  Q
    |||||||||||| |||||||| |||||||||||||||    
T  50533110 atatattatgcaatgtttctaccaactgagctaagtt 50533074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 30243290 - 30243250
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  30243290 tatatattatgcattgtctctaccaactgagctaagttcac 30243250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 22571887 - 22571926
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  22571887 atatattatgcattgtctatatcaactgagctaagttcac 22571926  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 23782906 - 23782861
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagac 113  Q
    ||||||||||||||||| ||| |||| |||||||| ||||||||||    
T  23782906 atatattatgcattgttcctaccaacagagctaagatcacaaagac 23782861  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 9459078 - 9459118
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  9459078 tatatattatgcattgtctttatcaactgagctaagctcac 9459118  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 29896316 - 29896344
Alignment:
Q  68 atatattatgcattgtttctatcaactga 96  Q
    |||||||||||||||||||||||||||||    
T  29896316 atatattatgcattgtttctatcaactga 29896344  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 30089089 - 30089049
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  30089089 tatatattatgcattgtccctaccaactgagctaagttcac 30089049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 30125693 - 30125653
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  30125693 tatatattatgcattgtccctaccaactgagctaagttcac 30125653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 30799110 - 30799150
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcaca 108  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  30799110 atatattatgcattgtttctaccaactgaaataagttcaca 30799150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 37984394 - 37984358
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagtt 104  Q
    |||||||||||||||||| || |||||||||||||||    
T  37984394 atatattatgcattgtttataccaactgagctaagtt 37984358  T

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Target: scaffold0350 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 1287 - 1240
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagacat 115  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  1287 atatattatgcattgtccatatcaactgagctaagttcacgaagacat 1240  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 33223907 - 33223868
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcac 107  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  33223907 atatattatgcattgtttctaccaactgagctaagctcac 33223868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 25441522 - 25441568
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagaca 114  Q
    ||||||||||||||||   || |||||||||||||||||||||||||    
T  25441522 atatattatgcattgtccataccaactgagctaagttcacaaagaca 25441568  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 1501490 - 1501449
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcaca 108  Q
    ||||||||||||||||| | ||| ||||||||||||||||||    
T  1501490 tatatattatgcattgtctttattaactgagctaagttcaca 1501449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 12131694 - 12131747
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagttcacaaagacattaaca 120  Q
    ||||||||||||||||| | || ||| ||| ||||| |||||||||||||||||    
T  12131694 tatatattatgcattgtctataccaattgaactaagctcacaaagacattaaca 12131747  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 25289335 - 25289376
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaa 109  Q
    ||||||||| |||||||| || ||||||||||||||||||||    
T  25289335 atatattatacattgtttttaccaactgagctaagttcacaa 25289376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 31214673 - 31214628
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcacaaagac 113  Q
    |||||||||||||| |||||| ||||| | ||||||||||||||||    
T  31214673 atatattatgcattatttctaccaacttaactaagttcacaaagac 31214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 19277612 - 19277574
Alignment:
Q  69 tatattatgcattgtttctatcaactgagctaagttcac 107  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  19277612 tatattatgcattgttcctatcaactgagttaagttcac 19277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 14945535 - 14945575
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaagttcaca 108  Q
    |||||||||||| ||| |||||||||||||||||| |||||    
T  14945535 atatattatgcactgtctctatcaactgagctaagctcaca 14945575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 29962397 - 29962363
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaag 102  Q
    ||||||||| |||||||||||||||||||||||||    
T  29962397 atatattatacattgtttctatcaactgagctaag 29962363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 30012401 - 30012435
Alignment:
Q  68 atatattatgcattgtttctatcaactgagctaag 102  Q
    ||||||||| |||||||||||||||||||||||||    
T  30012401 atatattatacattgtttctatcaactgagctaag 30012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 3416582 - 3416619
Alignment:
Q  67 tatatattatgcattgtttctatcaactgagctaagtt 104  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  3416582 tatatattatacattgtttctatcaactgagttaagtt 3416619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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