View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_14 (Length: 567)
Name: NF20816_high_14
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 37221480 - 37221058
Alignment:
| Q |
13 |
aaaatattgaatttgaactcaagtacttttgagacgtgagtagcattccgataaagaaaaactactagtagtgtttttggatattttaagaaacaagcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221480 |
aaaatattgaatttgaactcaagtacttttgagacgtgagtagcattccgataaagaaaaactactagtagtgtttttggatattttaagaaacaagcaa |
37221381 |
T |
|
| Q |
113 |
aggtgggtccgatccaaataattgagcagtgtgaatggaatagaatgattgctgccaccccaactcataggtcattaacatcgagagtacagtgcattat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
37221380 |
aggtgggtccgatccaaataattgagcagtgtgaatggaatagaatgattgctgccaccccaactcataagtca-taacatcgagagtacagtgcattat |
37221282 |
T |
|
| Q |
213 |
acttggaatatgggtcgtgtgaaggagaataaatgaagaagtagcttccagttttgcaggttgcagtgtgaaaggatcaatgcaccatgcttgtccaatc |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221281 |
acttggaatatgggtcgtgtgaag--gaataaatgaagaagtagcttccagttttgcaggttgcagtgtgaaaggatcaatgcaccatgcttgtccaatc |
37221184 |
T |
|
| Q |
313 |
accaacatccaatgggcacgtgcacgtggggaaaaagttggagcctacctaccagccagg------aacaacacccaactctcagccccctttcacaaat |
406 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37221183 |
accaacatccaatgggcacatgcacgtggggaaatagttggagcctacctaccagccaggaacaacaacaacacccaactctcagccccctttcacaaat |
37221084 |
T |
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| Q |
407 |
gaaacaattgttagaataccagtagt |
432 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37221083 |
gaaacaattgttagaataccagtagt |
37221058 |
T |
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