View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_high_2 (Length: 1083)

Name: NF20816_high_2
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_high_2
NF20816_high_2
[»] chr1 (25 HSPs)
chr1 (18-1071)||(41983256-41984328)
chr1 (547-618)||(20725982-20726053)
chr1 (539-617)||(18032287-18032365)
chr1 (539-621)||(44410708-44410790)
chr1 (540-617)||(33690159-33690236)
chr1 (549-617)||(24638702-24638770)
chr1 (539-617)||(962520-962598)
chr1 (536-617)||(42866278-42866359)
chr1 (536-617)||(44257770-44257851)
chr1 (539-617)||(3252226-3252304)
chr1 (536-617)||(3355400-3355481)
chr1 (536-617)||(28234799-28234880)
chr1 (536-617)||(37034900-37034981)
chr1 (547-623)||(49241636-49241712)
chr1 (753-840)||(41986125-41986212)
chr1 (537-619)||(45193222-45193304)
chr1 (536-617)||(3014194-3014274)
chr1 (545-617)||(50323330-50323402)
chr1 (548-619)||(9293640-9293711)
chr1 (547-618)||(32364120-32364191)
chr1 (547-617)||(1846928-1846998)
chr1 (536-618)||(20117866-20117948)
chr1 (567-617)||(46535319-46535369)
chr1 (539-619)||(28281974-28282054)
chr1 (550-615)||(40960248-40960313)
[»] chr3 (26 HSPs)
chr3 (539-618)||(35054734-35054813)
chr3 (536-620)||(2849287-2849370)
chr3 (539-617)||(42217186-42217264)
chr3 (536-619)||(30465108-30465191)
chr3 (536-622)||(37599895-37599981)
chr3 (536-618)||(39850694-39850776)
chr3 (547-617)||(51537222-51537292)
chr3 (548-617)||(10259228-10259297)
chr3 (540-617)||(53351171-53351248)
chr3 (536-617)||(55258106-55258187)
chr3 (536-616)||(11412514-11412594)
chr3 (539-618)||(29727736-29727815)
chr3 (546-617)||(41462386-41462457)
chr3 (539-617)||(15100604-15100682)
chr3 (536-617)||(29025259-29025340)
chr3 (536-617)||(42907769-42907850)
chr3 (536-619)||(23241884-23241967)
chr3 (536-617)||(11574994-11575075)
chr3 (536-617)||(33634883-33634964)
chr3 (547-617)||(11676264-11676333)
chr3 (547-617)||(53724061-53724131)
chr3 (535-618)||(27002521-27002604)
chr3 (583-617)||(11018705-11018739)
chr3 (583-617)||(44201109-44201143)
chr3 (567-617)||(52404395-52404445)
chr3 (588-621)||(26725548-26725581)
[»] chr8 (22 HSPs)
chr8 (547-617)||(32493218-32493288)
chr8 (536-619)||(19726735-19726818)
chr8 (535-617)||(36833904-36833986)
chr8 (536-617)||(42063462-42063543)
chr8 (536-617)||(40485575-40485656)
chr8 (536-617)||(41726380-41726461)
chr8 (536-619)||(3655855-3655938)
chr8 (536-618)||(597233-597315)
chr8 (539-617)||(20821821-20821899)
chr8 (536-617)||(30360455-30360536)
chr8 (567-619)||(18656677-18656729)
chr8 (536-617)||(8014943-8015024)
chr8 (536-617)||(14910095-14910176)
chr8 (536-617)||(31008557-31008638)
chr8 (536-616)||(44056524-44056604)
chr8 (539-618)||(26403649-26403728)
chr8 (539-618)||(36823467-36823546)
chr8 (548-617)||(11031030-11031099)
chr8 (539-608)||(28761706-28761775)
chr8 (567-617)||(4455400-4455450)
chr8 (583-617)||(36658515-36658549)
chr8 (536-617)||(13487172-13487252)
[»] chr5 (19 HSPs)
chr5 (539-615)||(13956932-13957008)
chr5 (547-617)||(6459707-6459777)
chr5 (537-618)||(14351961-14352042)
chr5 (536-617)||(35758035-35758116)
chr5 (539-619)||(6273126-6273206)
chr5 (536-617)||(8761116-8761197)
chr5 (536-617)||(36745889-36745970)
chr5 (536-617)||(38040623-38040704)
chr5 (536-617)||(40143904-40143985)
chr5 (536-623)||(27194794-27194881)
chr5 (547-617)||(18942249-18942319)
chr5 (535-617)||(29823257-29823339)
chr5 (536-617)||(14635345-14635426)
chr5 (536-617)||(32383910-32383991)
chr5 (536-617)||(3752454-3752535)
chr5 (567-617)||(389707-389757)
chr5 (547-617)||(814806-814876)
chr5 (539-617)||(35456507-35456585)
chr5 (584-617)||(17421303-17421336)
[»] scaffold0231 (1 HSPs)
scaffold0231 (536-623)||(11055-11142)
[»] chr4 (19 HSPs)
chr4 (535-617)||(12704677-12704759)
chr4 (536-617)||(25232693-25232774)
chr4 (539-617)||(4414415-4414493)
chr4 (536-617)||(8132791-8132872)
chr4 (536-617)||(11792384-11792465)
chr4 (536-620)||(23611559-23611643)
chr4 (539-617)||(44352087-44352165)
chr4 (539-617)||(54822047-54822125)
chr4 (536-617)||(1936529-1936610)
chr4 (550-617)||(29695468-29695535)
chr4 (536-619)||(55675418-55675501)
chr4 (536-617)||(24394073-24394154)
chr4 (539-618)||(6354995-6355074)
chr4 (536-617)||(26203699-26203780)
chr4 (535-618)||(28359696-28359779)
chr4 (547-617)||(19916464-19916534)
chr4 (541-619)||(43245743-43245821)
chr4 (539-617)||(38519287-38519365)
chr4 (567-617)||(55497461-55497511)
[»] chr7 (22 HSPs)
chr7 (536-617)||(36858133-36858214)
chr7 (536-618)||(11734264-11734346)
chr7 (539-617)||(34259299-34259377)
chr7 (539-617)||(46170641-46170719)
chr7 (536-617)||(14801982-14802063)
chr7 (536-617)||(15248974-15249055)
chr7 (536-617)||(16217027-16217108)
chr7 (547-618)||(10992749-10992820)
chr7 (535-617)||(1582155-1582237)
chr7 (539-617)||(31813488-31813566)
chr7 (536-617)||(36099710-36099791)
chr7 (536-617)||(45269472-45269553)
chr7 (539-615)||(5418899-5418975)
chr7 (536-616)||(10198308-10198388)
chr7 (536-619)||(24096742-24096825)
chr7 (536-617)||(9822519-9822600)
chr7 (536-617)||(10724444-10724525)
chr7 (536-617)||(29983235-29983316)
chr7 (536-617)||(34191925-34192006)
chr7 (536-617)||(44605954-44606035)
chr7 (536-615)||(33628281-33628360)
chr7 (536-617)||(33610590-33610671)
[»] chr6 (10 HSPs)
chr6 (540-617)||(30269593-30269670)
chr6 (539-617)||(6817290-6817368)
chr6 (536-617)||(23595691-23595772)
chr6 (536-617)||(24068219-24068300)
chr6 (567-617)||(22351297-22351347)
chr6 (567-617)||(29419813-29419863)
chr6 (536-617)||(21289551-21289631)
chr6 (547-619)||(8464279-8464351)
chr6 (547-617)||(30426318-30426388)
chr6 (536-615)||(31513395-31513474)
[»] chr2 (23 HSPs)
chr2 (536-617)||(35305318-35305399)
chr2 (536-618)||(3988704-3988786)
chr2 (536-617)||(17513020-17513101)
chr2 (536-618)||(7153436-7153517)
chr2 (539-617)||(16106740-16106818)
chr2 (547-617)||(16457781-16457851)
chr2 (536-618)||(24128752-24128834)
chr2 (536-617)||(23293208-23293289)
chr2 (536-619)||(6065533-6065616)
chr2 (539-617)||(37484403-37484481)
chr2 (150-258)||(13016163-13016276)
chr2 (536-617)||(19881939-19882020)
chr2 (536-617)||(32878736-32878817)
chr2 (538-617)||(10810582-10810661)
chr2 (550-617)||(21800719-21800786)
chr2 (567-617)||(29523936-29523986)
chr2 (540-617)||(18540658-18540735)
chr2 (536-617)||(39678304-39678385)
chr2 (547-617)||(22315224-22315294)
chr2 (539-617)||(37254859-37254937)
chr2 (567-617)||(37314987-37315037)
chr2 (536-617)||(20907071-20907152)
chr2 (536-617)||(23250969-23251050)
[»] scaffold0036 (1 HSPs)
scaffold0036 (536-619)||(51907-51990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (536-618)||(12720-12802)
[»] scaffold0043 (1 HSPs)
scaffold0043 (539-617)||(64345-64423)
[»] scaffold0116 (1 HSPs)
scaffold0116 (540-617)||(7839-7916)
[»] scaffold0242 (1 HSPs)
scaffold0242 (536-618)||(17874-17956)
[»] scaffold0712 (1 HSPs)
scaffold0712 (540-617)||(4954-5030)
[»] scaffold0709 (1 HSPs)
scaffold0709 (540-617)||(4974-5050)


Alignment Details
Target: chr1 (Bit Score: 848; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 18 - 1071
Target Start/End: Original strand, 41983256 - 41984328
Alignment:
Q  18 agtatagtggggaagtagttgcatttgaaaattgttgttaaacgtgtgtatttggataacatggtgcccactacttatgctagccaactcaccaacatgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41983256 agtatagtggggaagtagttgcatttgaaaattgttgttaaacgtgtgtatttggatgacatggtgcccactacttatgctagccaactcaccaacatgc 41983355  T
Q  118 aacatctatgtttagattgatgatatgtgata---------------gaatggaataaattaagattttattgtttggattgtcattataaaggtgggat 202  Q
    |||| ||||||||||||| ||||||| ||||                |||||||||||||||||||||||||||||||||||| |||| || ||||||||    
T  41983356 aacacctatgtttagattaatgatatatgatgaaatgaaatgggatggaatggaataaattaagattttattgtttggattgtaattacaagggtgggat 41983455  T
Q  203 ggaactcaatagcatgtattctatcactgattctcattttgcttaccctccaatttatgtggaatgagttagaatcctcgattaaattatttttcaaatt 302  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41983456 ggaactcaatagcatgtattccatccctgattctcattttgcttaccctccaatttatgtggaatgagttagaatcctcgattaaattatttttcaaatt 41983555  T
Q  303 acagatatatccctaccttctctacattaattatgtatgttcccttgagtcttcacttccggttatgttttcctaccatacatgcactg---ccatggtt 399  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||   ||||||||    
T  41983556 acaaatatatccctaccttctctacattaattatgtatgttcccttgagtcttcacttccagttatgttttcgtaccatacatgcactgccaccatggtt 41983655  T
Q  400 catgattataaaattcatcttcataaaaacacaaacagttc--atagtgatttattattaactagcgtcatttttgtttcaatgagaataacttgctgca 497  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41983656 catgattataaaattcatcttcataaaaacacaaacagttctgatagtgatttattattaactagcgtcatttttgtttcaatgagaataacttgctgca 41983755  T
Q  498 ctttttaacacctattattaatagggttaattaagtttcaatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||    
T  41983756 ctttttaacacctattattaatagggttaattaagtttcaatgactcaatggttcgaccattaactcactgactcagtacccatgctgagttgatgaccg 41983855  T
Q  598 cgccgagttttaaaactatgatcttagtcatctggttttaatcaatggattacaatgtttttatttatttatttgccaacttaaactcttaattgtcaca 697  Q
     |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  41983856 agccgagttttaaaactatgatcttagtcatttggttttaatcaatggtttacaatgtttt--tttatttatttgccaacttaaactcttaattgtcaca 41983953  T
Q  698 ttttaatcaaatggtctcaaatgcacctactacagaacaaaatgattcctagaccgtagggaatcagggtccacttttgatgcagtcgagcattgcggag 797  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41983954 ttttaatcaaatggtcacaaatgcacctactacagaacgacatgattcctagaccgtagggaatccgggtccacttttgatgcagtcgagcattgcggag 41984053  T
Q  798 tgtccaatcaagattaaacggctcaaatttcaatcacacatttaattctaattacct-ccttttacatcacatttttccttattgtagtaatataggcac 896  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  41984054 tgtccaatcaagattaaacggctcaaatttcaatcacacatttaactctaattacctcccttttacatcacatttttctttattatagtaatataggcac 41984153  T
Q  897 atatatggttagggtgattaatacagcatttgtgaattaggnnnnnnncagtccagtaacatgaagaaataattggtcatgttgggagaaattgtttttt 996  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41984154 atatatggttagggtgattaatacagcatttgtgaattaggaaaaaaacagtccagtaacatgaagaaataattggtcatgttgggagaaagtgtttttt 41984253  T
Q  997 aatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaaaaactatagatgatg 1071  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41984254 aatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaaaaactatagatgatg 41984328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 547 - 618
Target Start/End: Complemental strand, 20726053 - 20725982
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  20726053 tggttcgaccattaactcattgacccagtatccatgtcgagtcgatgaccgagccgagttttaaaactatga 20725982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 18032365 - 18032287
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||||||||||||||||||| ||| |||||| |||||||||||||| ||||| |||||||||||||||||||    
T  18032365 tgactcagtggttcgaccattaactcattgatccagtacccatgccgagtcgacgaccgagccgagttttaaaactatg 18032287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 539 - 621
Target Start/End: Complemental strand, 44410790 - 44410708
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatct 621  Q
    ||||||| |||||||||||||||| || |||||||||| || |||||||||||||||||  ||||||||||||||||||||||    
T  44410790 tgactcagtggttcgaccattaacccagtgacccagtacccttgccgagtcgatgaccgaaccgagttttaaaactatgatct 44410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 540 - 617
Target Start/End: Complemental strand, 33690236 - 33690159
Alignment:
Q  540 gactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| |||||||||||||||| || |||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  33690236 gactcagtggttcgaccattaacccaatgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 33690159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 549 - 617
Target Start/End: Complemental strand, 24638770 - 24638702
Alignment:
Q  549 gttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||    
T  24638770 gttcgaccattaactcactgacccactacccatgccgagtcgatgaccgagctgagttttaaaactatg 24638702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 962520 - 962598
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||||||||||||||||| | ||||| |||| | |||||||||||||||||| |||||||||||||||||||    
T  962520 tgactcagtggttcgaccattaacttattgacctagtacctatgccgagtcgatgaccgagccgagttttaaaactatg 962598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 42866359 - 42866278
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  42866359 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 42866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 44257851 - 44257770
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||  ||||||||||||| ||||| |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  44257851 caatgactcggtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 44257770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 3252304 - 3252226
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||| |||||||||||| |||||||||| |  | ||||||||||||||| |||||||||||||||||||    
T  3252304 tgactcagtggttcaaccattaactcagtgacccagtacctctaccgagtcgatgaccgagccgagttttaaaactatg 3252226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 3355481 - 3355400
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| || |||||||||| || || |||||||||||||  |||||||||||||||| ||||| |||||||||||||    
T  3355481 caatgactcagtgattcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgaattttaaaactatg 3355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 28234880 - 28234799
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||| ||||||| |||||||||||||||||||    
T  28234880 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 28234799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 37034900 - 37034981
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| || ||||||||||||| || || | |||||||| ||||||||||||||||| || |||||||||||||||||||    
T  37034900 caatgacccagtggttcgaccattgacccagtaacccagtacccatgccgagtcgatgatcgagccgagttttaaaactatg 37034981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 547 - 623
Target Start/End: Complemental strand, 49241712 - 49241636
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatctta 623  Q
    |||||||||||||||| || ||| ||||||||| || ||| |||||||||| ||||| |||||||||||||||||||    
T  49241712 tggttcgaccattaacccaatgatccagtatccctgtcgaatcgatgaccgagccgaattttaaaactatgatctta 49241636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 753 - 840
Target Start/End: Original strand, 41986125 - 41986212
Alignment:
Q  753 gtagggaatcagggtccacttttgatgcagtcgagcattgcggagtgtccaatcaagattaaacggctcaaatttcaatcacacattt 840  Q
    |||| ||||| |||||||||||||| |||||||||||||  |||| || |||||||||||| || || ||||||||||||| ||||||    
T  41986125 gtagagaatccgggtccacttttgacgcagtcgagcattatggagcgttcaatcaagattagaccgcccaaatttcaatcagacattt 41986212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 537 - 619
Target Start/End: Original strand, 45193222 - 45193304
Alignment:
Q  537 aatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    ||||| ||| ||||||||||| | || || |||||||| | || |||||||||||||| || |||||||||||||||||||||    
T  45193222 aatgattcagtggttcgaccaatgacccagtgacccagcacccttgccgagtcgatgatcgagccgagttttaaaactatgat 45193304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 3014194 - 3014274
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||||||||||||||  || |||||||||| || |||||||||||| | || | |||||||||||||||||    
T  3014194 caatgactcagtggttcgaccattaatccagtgacccagtacccctgccgagtcgat-aacgagacgagttttaaaactatg 3014274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 545 - 617
Target Start/End: Complemental strand, 50323402 - 50323330
Alignment:
Q  545 aatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||| |||| || ||||||||||||| | |||||||||  ||||  ||||||||||||||||||    
T  50323402 aatggttcgaccaataacccagtgacccagtatccttaccgagtcgacaaccgaaccgagttttaaaactatg 50323330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 548 - 619
Target Start/End: Complemental strand, 9293711 - 9293640
Alignment:
Q  548 ggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||||| || || |||||||||| ||  | ||||||||||| || |||||||||||||||||||||    
T  9293711 ggttcgaccattgacccattgacccagtacccccgtcgagtcgatgatcgagccgagttttaaaactatgat 9293640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 547 - 618
Target Start/End: Complemental strand, 32364191 - 32364120
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||||||||||| ||  |||||| || || || |||||||||||||| ||||| ||||||||||||||    
T  32364191 tggttcgaccattaacccagcgacccaatacccctgtcgagtcgatgaccgagccgaattttaaaactatga 32364120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 1846928 - 1846998
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||| || | |||||||| |   ||||||||||||| || |||||||||||||||||||    
T  1846928 tggttcgaccattaacccattaacccagtacctccgccgagtcgatgatcgagccgagttttaaaactatg 1846998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 536 - 618
Target Start/End: Original strand, 20117866 - 20117948
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||| ||||||||||||||||||| || || |||| |||||||| | |||||| |||||||| |||   ||||||||||||||    
T  20117866 caataactcaatggttcgaccattgacccaatgactcagtatccctaccgagttgatgaccgagccagtttttaaaactatga 20117948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 46535319 - 46535369
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  46535319 tgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 46535369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 539 - 619
Target Start/End: Complemental strand, 28282054 - 28281974
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||| ||||||||| |||| | ||||| |||||||||| ||   ||||||| |||||||  ||||||||||||||||||||    
T  28282054 tgacccaatggttcaaccaatgactcagtgacccagtaacctcaccgagtcaatgaccggtccgagttttaaaactatgat 28281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 550 - 615
Target Start/End: Original strand, 40960248 - 40960313
Alignment:
Q  550 ttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaacta 615  Q
    |||||||||||||||  ||||||| ||||| ||| |||||||||||||  | || |||||||||||    
T  40960248 ttcgaccattaactcgttgacccaatatccctgctgagtcgatgaccgaactgaattttaaaacta 40960313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 8e-30; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 539 - 618
Target Start/End: Original strand, 35054734 - 35054813
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  35054734 tgacccaatggttcgaccattaactcactgacccagtacccatgccgagtcgatgaccgagccgagttttaaaactatga 35054813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 2849287 - 2849370
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatc 620  Q
    ||||||||||||| ||||||||||||| || |||||||||||||   ||||||||||||||| ||||||||||||||||||||||    
T  2849287 caatgactcaatgattcgaccattaacccattgacccagtatccca-ccgagtcgatgaccgagccgagttttaaaactatgatc 2849370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 42217186 - 42217264
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||||||||||||||||||| |||||||||| |  | ||||||||||||||| |||||||||||||||||||    
T  42217186 tgactcagtggttcgaccattaactcaatgacccagtacctttaccgagtcgatgaccgagccgagttttaaaactatg 42217264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 30465108 - 30465191
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| ||||| |||||||||||||||    
T  30465108 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgaattttaaaactatgat 30465191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 37599895 - 37599981
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatctt 622  Q
    |||||||||| ||||||||||||| |  || |||||||||| ||  ||| |||||||||||| ||||||||||||||||||||||||    
T  37599895 caatgactcagtggttcgaccattgatccattgacccagtacccccgccaagtcgatgaccgagccgagttttaaaactatgatctt 37599981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 39850776 - 39850694
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||||| ||||||||||||| || || ||||| |||| ||  |||||||||||||||| ||||||||||||||||||||    
T  39850776 caatgactcagtggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatga 39850694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 51537222 - 51537292
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||| || ||||||| || || ||||||||||||||||| |||||||||||||||||||    
T  51537222 tggttcgaccattaacccagtgacccaatacccctgccgagtcgatgaccgagccgagttttaaaactatg 51537292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 548 - 617
Target Start/End: Original strand, 10259228 - 10259297
Alignment:
Q  548 ggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||| || |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  10259228 ggttcgaccattaacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 10259297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 540 - 617
Target Start/End: Complemental strand, 53351248 - 53351171
Alignment:
Q  540 gactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| |||||| |||||||||  | |||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  53351248 gactcagtggttcaaccattaacctaatgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 53351171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 55258106 - 55258187
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||   ||||||||||||||| |||||||||||||||||||    
T  55258106 caatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgagccgagttttaaaactatg 55258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 536 - 616
Target Start/End: Original strand, 11412514 - 11412594
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactat 616  Q
    |||||||||| ||||||||||| | || || ||||||| || || ||||||||||||||||| ||||||||||||||||||    
T  11412514 caatgactcagtggttcgaccaatgacccagtgacccaatacccttgccgagtcgatgaccgagccgagttttaaaactat 11412594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 539 - 618
Target Start/End: Complemental strand, 29727815 - 29727736
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    ||||||| |||||| ||||||||| || ||||||| || || |||||| |||||||||| ||||||||||||||||||||    
T  29727815 tgactcagtggttcaaccattaacccaatgacccaatacccctgccgaatcgatgaccgagccgagttttaaaactatga 29727736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 546 - 617
Target Start/End: Original strand, 41462386 - 41462457
Alignment:
Q  546 atggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||  ||||| |||||||||| | ||| |||||||||||||| |||||||||||||||||||    
T  41462386 atggttcgaccatcgactcagtgacccagtacctatgtcgagtcgatgaccgagccgagttttaaaactatg 41462457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 15100682 - 15100604
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||||||||||||| || ||||||| ||||| |  ||||||||||| || |||||||||||||||||||    
T  15100682 tgactcagtggttcgaccattaacccaatgacccaatatccttatcgagtcgatgatcgagccgagttttaaaactatg 15100604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 29025340 - 29025259
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||||| |||||| || || |||||||||| ||  |||||||||||||||| || ||||||||||||||||    
T  29025340 caatgactcactggttcaaccattgacccattgacccagtacccccgccgagtcgatgaccgagctgagttttaaaactatg 29025259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 42907850 - 42907769
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||||||  | |||||||||  || |||||||||||  |||| |||||||||||||||||||    
T  42907850 caatgactcagtggttcgaccattaacctaatgacccagtgcccctgccgagtcgacaaccgagccgagttttaaaactatg 42907769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 23241884 - 23241967
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||| ||| ||||||||||||| || || ||||||| || ||  |||||||||||||||| ||||| |||||||||||||||    
T  23241884 caatgattcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgaattttaaaactatgat 23241967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 11575075 - 11574994
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| | |||||||||||||  | ||| |||||||||| | ||||||||||||||| || | |||||||||||||||||    
T  11575075 caatgacccgatggttcgaccatcgattcaatgacccagtacctatgccgagtcgatgatcgagtcgagttttaaaactatg 11574994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 33634964 - 33634883
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || | |||||||| ||  ||||||||||||| ||  ||||||||||||||||||    
T  33634964 caatgactcagtggttcgaccattgacccattaacccagtacccccgccgagtcgatgatcgaaccgagttttaaaactatg 33634883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 11676264 - 11676333
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||| || || |||||||||| ||  |||||||||||||||| ||| |||||||||||||||    
T  11676264 tggttcgaccattgacccattgacccagtacccc-gccgagtcgatgaccgagccaagttttaaaactatg 11676333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 547 - 617
Target Start/End: Complemental strand, 53724131 - 53724061
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||||||| |||||||||| |   | |||| ||||||||  |||||||||||||||||||    
T  53724131 tggttcgaccattaactcattgacccagtaccgtggtcgaggcgatgaccaagccgagttttaaaactatg 53724061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 618
Target Start/End: Complemental strand, 27002604 - 27002521
Alignment:
Q  535 tcaatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||  |||| |||| |||||| || || |||| ||||| || ||||||||| ||| ||| ||||||||||||||||||||    
T  27002604 tcaatgatccaatagttcaaccattgacccagtgactcagtacccttgccgagtcaatgtccgagccgagttttaaaactatga 27002521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 11018739 - 11018705
Alignment:
Q  583 ccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||| |||||||||||||||||||    
T  11018739 ccgagtcgatgaccgagccgagttttaaaactatg 11018705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 44201143 - 44201109
Alignment:
Q  583 ccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||| |||||||||||||||||||    
T  44201143 ccgagtcgatgaccgagccgagttttaaaactatg 44201109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 52404395 - 52404445
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||| |||||||||||| || | |||||||||||||||||    
T  52404395 tgacccagtacccataccgagtcgatgatcgaggcgagttttaaaactatg 52404445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 621
Target Start/End: Complemental strand, 26725581 - 26725548
Alignment:
Q  588 tcgatgaccgcgccgagttttaaaactatgatct 621  Q
    |||||||||| |||||||||||||||||||||||    
T  26725581 tcgatgaccgagccgagttttaaaactatgatct 26725548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 32493218 - 32493288
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  32493218 tggttcgaccattaactcactgacccaatacccatgccgagtcgatgaccgagccgagttttaaaactatg 32493288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 19726735 - 19726818
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| |||||||||||||||||||||    
T  19726735 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatgat 19726818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 36833986 - 36833904
Alignment:
Q  535 tcaatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||| ||||||||||||| || || |||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  36833986 tcaatgattcagtggttcgaccattgacccaatgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 36833904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 42063543 - 42063462
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  42063543 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 42063462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 40485575 - 40485656
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||| ||||||| |||||||||||||||||||    
T  40485575 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 40485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 41726380 - 41726461
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| |   |||||||||||||||| |||||||||||||||||||    
T  41726380 caatgactcagtggttcgaccattgacccattgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactatg 41726461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 536 - 619
Target Start/End: Complemental strand, 3655938 - 3655855
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||| ||||||||||||| |  || ||| |||||||||  |||||||||||||||| ||||| |||||||||||||||    
T  3655938 caatgactcagtggttcgaccattgatccattgatccagtatccccgccgagtcgatgaccgagccgaattttaaaactatgat 3655855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 597315 - 597233
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||||| ||||||||||||||||||| ||| |||||  || | ||||||||||||| | ||||| ||||||||||||||    
T  597315 caatgactcagtggttcgaccattaactcaatgatccagtgcccctaccgagtcgatgactgagccgaattttaaaactatga 597233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 20821821 - 20821899
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||||||||||||| || |||| |||||||| ||||||||||||| ||  ||| |||||||||||||||    
T  20821821 tgactcagtggttcgaccattaacccagtgactcagtatccttgccgagtcgatggccaagccaagttttaaaactatg 20821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 30360536 - 30360455
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| |   ||||| |||||||||| |||||||||||||||||||    
T  30360536 caatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactatg 30360455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 18656677 - 18656729
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  18656677 tgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatgat 18656729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 8014943 - 8015024
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| |  || ||||| |||| ||  |||||||| ||||||| |||||||||||||||||||    
T  8014943 caatgactcactggttcgaccattgatccagtgacctagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 8015024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 14910176 - 14910095
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||||||| |||| || || ||| ||||||  |  |||||||||||||||| |||||||||||||||||||    
T  14910176 caatgactcagtggttcgatcattgacccattgatccagtactcccgccgagtcgatgaccgagccgagttttaaaactatg 14910095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 31008557 - 31008638
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||| ||||| ||  ||||||||||||||||  |||| |||||||||||||    
T  31008557 caatgactcactggttcgaccattgacccattgactcagtacccccgccgagtcgatgaccgaaccgaattttaaaactatg 31008638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 536 - 616
Target Start/End: Original strand, 44056524 - 44056604
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactat 616  Q
    |||||||||| ||||||||||||| || || |||  ||||| || |||||||||||||| || || |||||||||||||||    
T  44056524 caatgactcagtggttcgaccattgacccagtgattcagtacccctgccgagtcgatgatcgagctgagttttaaaactat 44056604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 539 - 618
Target Start/End: Original strand, 26403649 - 26403728
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    ||||||| |||||| |||||||||||| |||| ||||| || |  |||||||||||||  |||||||||||||| |||||    
T  26403649 tgactcagtggttcaaccattaactcaatgacacagtacccctatcgagtcgatgaccaagccgagttttaaaattatga 26403728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 539 - 618
Target Start/End: Original strand, 36823467 - 36823546
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||| ||||||||| |||| ||||||| |||||||||| ||   ||||||| |||||||  |||||||||||||||||||    
T  36823467 tgacccaatggttcaaccaataactcagtgacccagtaacctcaccgagtcaatgaccggtccgagttttaaaactatga 36823546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 548 - 617
Target Start/End: Complemental strand, 11031099 - 11031030
Alignment:
Q  548 ggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||| || || |||||||||||||   |||||| ||||||||  ||||||||||||||||||    
T  11031099 ggttcgaccattgacccagtgacccagtatccccaccgagttgatgaccggtccgagttttaaaactatg 11031030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 539 - 608
Target Start/End: Original strand, 28761706 - 28761775
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagtttt 608  Q
    ||||||| ||||||||||||| || || | |||||||| || ||||||||||||||||| ||||| ||||    
T  28761706 tgactcagtggttcgaccattgacccaataacccagtacccctgccgagtcgatgaccgagccgaatttt 28761775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 4455400 - 4455450
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| || ||||||||||||| ||| ||| |||||||||||||||    
T  4455400 tgacccagtacccctgccgagtcgatggccgagccaagttttaaaactatg 4455450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 36658549 - 36658515
Alignment:
Q  583 ccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||| |||||||||||||||||||    
T  36658549 ccgagtcgatgaccgagccgagttttaaaactatg 36658515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 13487172 - 13487252
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| |  || ||| |||||| ||  ||||| |||||||||| ||||| |||||||||||||    
T  13487172 caatgactcagtggttcgaccattgatccattgatccagtacccc-gccgattcgatgaccgagccgaattttaaaactatg 13487252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 539 - 615
Target Start/End: Complemental strand, 13957008 - 13956932
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaacta 615  Q
    ||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||||||    
T  13957008 tgactcagtggttcgaccattaactcattgacccagtacctatgccgagtcgatgaccgagccgagttttaaaacta 13956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 547 - 617
Target Start/End: Complemental strand, 6459777 - 6459707
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||| || ||||||||||||||||    
T  6459777 tggttcgaccattaactcattgacccagtacccatgccgagtcgacgaccgagctgagttttaaaactatg 6459707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 537 - 618
Target Start/End: Original strand, 14351961 - 14352042
Alignment:
Q  537 aatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    ||||||||| ||||||||||||||||||||||| ||| |  || | ||||||||||||||| ||||||||||||||||||||    
T  14351961 aatgactcagtggttcgaccattaactcactgatccaatgcccctaccgagtcgatgaccgagccgagttttaaaactatga 14352042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 35758116 - 35758035
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || ||||||||||||| |   |||||||||||||||| |||||||||||||||||||    
T  35758116 caatgactcagtggttcgaccattgacccactgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactatg 35758035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 539 - 619
Target Start/End: Complemental strand, 6273206 - 6273126
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    ||||||| |||||||||||||||| || | |||||||  || ||||||||||||||||| |||||||||||||||||||||    
T  6273206 tgactcagtggttcgaccattaacccaataacccagtgcccctgccgagtcgatgaccgagccgagttttaaaactatgat 6273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 8761116 - 8761197
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| ||  | |||||||||| ||  ||||||||||||||||  ||||||||||||||||||    
T  8761116 caatgactcagtggttcgaccattgacctattgacccagtacccccgccgagtcgatgaccgatccgagttttaaaactatg 8761197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 36745889 - 36745970
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || ||||||||||  |  ||||| |||||||||| |||||||||||||||||||    
T  36745889 caatgactcagtggttcgaccattgacccattgacccagtactcccgccgaatcgatgaccgagccgagttttaaaactatg 36745970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 38040704 - 38040623
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| |   ||||| |||||||||| |||||||||||||||||||    
T  38040704 caatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactatg 38040623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 40143985 - 40143904
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||| |||| ||   |||||||||||||||| |||||||||||||||||||    
T  40143985 caatgactcagtggttcgaccattgacccattgactcagtttctccgccgagtcgatgaccgagccgagttttaaaactatg 40143904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 536 - 623
Target Start/End: Original strand, 27194794 - 27194881
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatctta 623  Q
    ||||||| || |||||| || ||| || || | |||||||| ||  |||||||||||||||| |||||||||||||||||||||||||    
T  27194794 caatgacacagtggttcaactattgacccattaacccagtaccccagccgagtcgatgaccgagccgagttttaaaactatgatctta 27194881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 547 - 617
Target Start/End: Complemental strand, 18942319 - 18942249
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||| || || |||||| ||| || | ||||||||||||||| |||||||||||||||||||    
T  18942319 tggttcgaccattgacccagtgacccggtacccctaccgagtcgatgaccgagccgagttttaaaactatg 18942249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 29823339 - 29823257
Alignment:
Q  535 tcaatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||| ||||||||||||| ||  | |||||||||| ||  |||||||||||||||| ||||| |||||||||||||    
T  29823339 tcaatgattcactggttcgaccattgacctagtgacccagtacccccgccgagtcgatgaccgagccgaattttaaaactatg 29823257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 14635426 - 14635345
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| ||||| | | |||||||||    
T  14635426 caatgactcactggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaactatg 14635345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 32383910 - 32383991
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| || |||||| | |||||||  | ||||||||||||| |  |||||||||||||| |||||||||||||||||||    
T  32383910 caatgacacagtggttcaatcattaacctagtgacccagtatccctatcgagtcgatgaccgagccgagttttaaaactatg 32383991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 3752535 - 3752454
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| || |||||||||| || || |||||||||| ||  |||||||||||||||| ||||| | | |||||||||    
T  3752535 caatgactcactgcttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaactatg 3752454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 389707 - 389757
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||| |||| || |||||| |||||||||| |||||||||||||||||||    
T  389707 tgacctagtacccctgccgaatcgatgaccgagccgagttttaaaactatg 389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 814806 - 814876
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||| || || ||| ||||||||| | |||||||||| ||||  | ||||||||||||||||    
T  814806 tggttcgaccattgacccagtgatccagtatccttaccgagtcgatcaccgatctgagttttaaaactatg 814876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 35456585 - 35456507
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||||||||||||| |  || ||| |||||| || | || ||| |||||||| |||||||||||||||||||    
T  35456585 tgactcagtggttcgaccattgatccaatgaaccagtacccctcccaagttgatgaccgagccgagttttaaaactatg 35456507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 584 - 617
Target Start/End: Complemental strand, 17421336 - 17421303
Alignment:
Q  584 cgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||| |||||||||||||||||||    
T  17421336 cgagtcgatgaccgagccgagttttaaaactatg 17421303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 536 - 623
Target Start/End: Original strand, 11055 - 11142
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatctta 623  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| |||||||||||||||||||||||||    
T  11055 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatgatctta 11142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 5e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 535 - 617
Target Start/End: Original strand, 12704677 - 12704759
Alignment:
Q  535 tcaatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||| ||||||||||||| ||| | |||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  12704677 tcaatgactcagtggttcgaccattgacttagtgacccagtacccatgcctagtcgatgaccgagccgagttttaaaactatg 12704759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 25232693 - 25232774
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  25232693 caatgactcagtggttcgaccattgacccattgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 25232774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 4414493 - 4414415
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||||||||||||| || || |||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  4414493 tgactcagtggttcgaccattgacccagtgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 4414415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 8132872 - 8132791
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||||| |||||||||||| |||||||||| |  | ||||||||||||||| |||||||||||||||||||    
T  8132872 caatgactcagtggttcaaccattaactcagtgacccagtacctctaccgagtcgatgaccgagccgagttttaaaactatg 8132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 11792465 - 11792384
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| ||| ||||||||||||| || || |||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  11792465 caatgattcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 11792384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 23611559 - 23611643
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatc 620  Q
    |||||||||| ||||||||||||| || || | |||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  23611559 caatgactcagtggttcgaccattgacccattaacccagtatccccgccgagtcgatgaccgaaccgagttttaaaactatgatc 23611643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 44352165 - 44352087
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||| |||||||||||||||  ||||| |||||||||| | ||||||||||||||||||  ||||||||||||||||||    
T  44352165 tgacccaatggttcgaccatcgactcagtgacccagtacctatgccgagtcgatgaccgaaccgagttttaaaactatg 44352087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 54822125 - 54822047
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||||| |||| ||||| ||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  54822125 tgactcagtggttcgatcattgactcagtgacccagtacacctgccgagtcgatgaccgagccgagttttaaaactatg 54822047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 1936529 - 1936610
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| || ||||||||||||||||| | || ||||||||||||||    
T  1936529 caatgactcagtggttcgaccattgacccattgacccagtacccctgccgagtcgatgaccgagtcgggttttaaaactatg 1936610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 550 - 617
Target Start/End: Original strand, 29695468 - 29695535
Alignment:
Q  550 ttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||  ||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  29695468 ttcgaccatcgactcagtgacccagtatctatgtcgagtcgatgaccgagccgagttttaaaactatg 29695535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 536 - 619
Target Start/End: Complemental strand, 55675501 - 55675418
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||| || |||||||||| ||  | |||||||||| || || |||||||||||||| |||||||||||||||||||||    
T  55675501 caatgactcagtgattcgaccattgacctattgacccagtacccctgtcgagtcgatgaccgagccgagttttaaaactatgat 55675418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 24394154 - 24394073
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||| ||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| |||||||||||||| ||||    
T  24394154 caataactcactggttcgaccattgacccagtgacccagtacccccgccgagtcgatgaccgagccgagttttaaaattatg 24394073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 539 - 618
Target Start/End: Original strand, 6354995 - 6355074
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||||||||||||||||||| || |||| ||| | |  |  |||||||||||||| ||||||||||||||||||||    
T  6354995 tgactcaatggttcgaccattaacccagtgactcagaacctctatcgagtcgatgaccgagccgagttttaaaactatga 6355074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 26203699 - 26203780
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||| |||||||||||||  ||||| |||||||||  |  || ||||||||||| || |||||||||||||||||||    
T  26203699 caatgactcgatggttcgaccatccactcagtgacccagtgcctctgtcgagtcgatgatcgagccgagttttaaaactatg 26203780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 535 - 618
Target Start/End: Original strand, 28359696 - 28359779
Alignment:
Q  535 tcaatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||  ||||||||||| |||| || || ||||||| || |  ||||||||| ||||||| ||||||||||||||||||||    
T  28359696 tcaatgatccaatggttcgatcattgacccagtgacccaatacctctgccgagtcaatgaccgagccgagttttaaaactatga 28359779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 19916464 - 19916534
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||  || |||||||||| |  ||| | ||||||||||| |||||||||||||||||||    
T  19916464 tggttcgaccattaatccaatgacccagtacctctgctgtgtcgatgaccgagccgagttttaaaactatg 19916534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 541 - 619
Target Start/End: Original strand, 43245743 - 43245821
Alignment:
Q  541 actcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||||||||||||||| || ||||||| || || || |||||||||  ||| | ||| |||||||||||||||    
T  43245743 actcaatggttcgaccattaacccagtgacccaatacccctgtcgagtcgatagccgagtcgaattttaaaactatgat 43245821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 38519365 - 38519287
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||||||||||| || ||||||| || |  || | ||||||||   | |||||||||||||||||||    
T  38519365 tgactcaatggttcgaccattaacccagtgacccaatacctttgtcaagtcgatggttgagccgagttttaaaactatg 38519287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 567 - 617
Target Start/End: Complemental strand, 55497511 - 55497461
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||| |  ||||||| |||||||| |||||||||||||||||||    
T  55497511 tgacccagtattcccgccgagttgatgaccgagccgagttttaaaactatg 55497461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 36858214 - 36858133
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  36858214 caatgactcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 36858133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 536 - 618
Target Start/End: Original strand, 11734264 - 11734346
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| ||||||||||||||||||||    
T  11734264 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatga 11734346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 34259299 - 34259377
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| ||||||||||||||||||| ||||| | || |||||||||||||| ||||| |||||||||||||||||||    
T  34259299 tgactcagtggttcgaccattaactcattgacctaatacccatgccgagtcgacgaccgagccgagttttaaaactatg 34259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 46170719 - 46170641
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||||||||||||| || ||||||||| ||| ||||||||||||||||| ||||| |||||||||||||    
T  46170719 tgactcagtggttcgaccattaacccaatgacccagtgtccctgccgagtcgatgaccgagccgaattttaaaactatg 46170641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 14801982 - 14802063
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||||||||||| || || ||||| |||| ||  |||||||||||||||| |||||||||||||||||||    
T  14801982 caatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 14802063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 15248974 - 15249055
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||||||||||| || || ||||| |||| ||  |||||||||||||||| |||||||||||||||||||    
T  15248974 caatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 15249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 16217027 - 16217108
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || ||||||| || |||||| ||||||||||||| |||||||||||||||||||    
T  16217027 caatgactcagtggttcgaccattgacccagtgacccaatacccatgctgagtcgatgaccgagccgagttttaaaactatg 16217108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 547 - 618
Target Start/End: Original strand, 10992749 - 10992820
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    ||||||||||||||||||| |||||||||| || ||||||||||| | ||| ||||||||||||||||||||    
T  10992749 tggttcgaccattaactcattgacccagtacccctgccgagtcgacggccgagccgagttttaaaactatga 10992820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 1582237 - 1582155
Alignment:
Q  535 tcaatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||| |||||||||||| ||||| |||||||||   | ||| ||||||||||||| |||||||||||||||||||    
T  1582237 tcaatgactcaacggttcgaccattgactcattgacccagtgcacctgctgagtcgatgaccgagccgagttttaaaactatg 1582155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 31813566 - 31813488
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||||||||||||| || ||| |||||| || ||||||||||||||||| | |||||||||||||||||    
T  31813566 tgactcagtggttcgaccattaacccattgaaccagtacccctgccgagtcgatgaccgagtcgagttttaaaactatg 31813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 36099710 - 36099791
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||| ||||||| |||||||||||||||||||    
T  36099710 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 36099791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 45269472 - 45269553
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| |   |||||||||||||||| |||||||||||||||||||    
T  45269472 caatgactcactggttcgaccattgacccagtgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactatg 45269553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 539 - 615
Target Start/End: Complemental strand, 5418975 - 5418899
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaacta 615  Q
    ||||||| |||||||||||||||| || | |||||||| |  ||||||||||||||||| |||||||||||||||||    
T  5418975 tgactcagtggttcgaccattaacccattaacccagtacctctgccgagtcgatgaccgagccgagttttaaaacta 5418899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 536 - 616
Target Start/End: Complemental strand, 10198388 - 10198308
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactat 616  Q
    |||||||||| ||||||||||||| || || ||| ||| || || ||||||||||||||||| ||||||||||||||||||    
T  10198388 caatgactcagtggttcgaccattgacccagtgatccaatacccctgccgagtcgatgaccgagccgagttttaaaactat 10198308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 24096742 - 24096825
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||| ||||||||||||| |  || |||||||||| || |||||| ||||||||||  ||||||||||||||||||||    
T  24096742 caatgactcagtggttcgaccattgatccagtgacccagtacccctgccgaatcgatgaccgaaccgagttttaaaactatgat 24096825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 9822600 - 9822519
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| ||||| ||||||| || ||  ||||| ||||||| || |||||||||||||||||||    
T  9822600 caatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatgatcgagccgagttttaaaactatg 9822519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 10724525 - 10724444
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| ||||| ||||||| || ||  ||||| ||||||| || |||||||||||||||||||    
T  10724525 caatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatgatcgagccgagttttaaaactatg 10724444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 29983316 - 29983235
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||   |||||||||||||||  ||||||||||||||||||    
T  29983316 caatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgaaccgagttttaaaactatg 29983235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 34191925 - 34192006
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||||||||||| ||| || ||| |||||| || ||| |||||||| |||| |||||||||||||||||||    
T  34191925 caatgactcagtggttcgaccatcaacccagtgatccagtacccctgcagagtcgatcaccgagccgagttttaaaactatg 34192006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 44605954 - 44606035
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||||| |||||| || || |||||||||| ||  |||||||||||||||| ||||| |||||||||||||    
T  44605954 caatgactcagtggttcaaccattgacccattgacccagtaccccggccgagtcgatgaccgagccgaattttaaaactatg 44606035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 536 - 615
Target Start/End: Original strand, 33628281 - 33628360
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaacta 615  Q
    ||||||| ||||||||| |||||| || || |||| ||||| || ||||||||| ||| ||| |||||||||||||||||    
T  33628281 caatgacccaatggttcaaccattgacccagtgactcagtacccctgccgagtcaatgtccgagccgagttttaaaacta 33628360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 33610671 - 33610590
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||||||||| ||||  |||| || | | |||| |||||| | || || |||||||||||||    
T  33610671 caatgactcagtggttcgaccattaactcagtgacttagtacccttacagagttgatgactgagcagaattttaaaactatg 33610590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 540 - 617
Target Start/End: Complemental strand, 30269670 - 30269593
Alignment:
Q  540 gactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| ||||||||||||||||||| |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  30269670 gactcagtggttcgaccattaactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 30269593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 6817368 - 6817290
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||||||||||||| || |||||||||| || | ||||||||||||||| |||||||||||||||||||    
T  6817368 tgactcagtggttcgaccattaacccaatgacccagtacccttaccgagtcgatgaccgagccgagttttaaaactatg 6817290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 23595772 - 23595691
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| |||||||||||| ||| || |||||||||| || |||||||||||| |||| |||||||||||||||||||    
T  23595772 caatgactcagtggttcgaccatcaacccagtgacccagtacccctgccgagtcgatcaccgagccgagttttaaaactatg 23595691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 24068219 - 24068300
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || ||||||| || ||  |||||||||||||||| |||||||||||||||||||    
T  24068219 caatgactcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgagttttaaaactatg 24068300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 22351297 - 22351347
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  22351297 tgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 22351347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 29419813 - 29419863
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  29419813 tgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 29419863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 21289631 - 21289551
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| ||||||| | |||||||||    
T  21289631 caatgactcactggttcgaccattgacccattgacccagta-ccccgccgagtcgatgaccgagccgagtatgaaaactatg 21289551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 547 - 619
Target Start/End: Complemental strand, 8464351 - 8464279
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    ||||||||||||||||||| ||||||||||    |||||||  |||||||| ||||| |||||||||||||||    
T  8464351 tggttcgaccattaactcagtgacccagtacatctgccgagctgatgaccgagccgaattttaaaactatgat 8464279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 547 - 617
Target Start/End: Complemental strand, 30426388 - 30426318
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||||||| | ||| |||||| ||   ||||||||||||||| ||||| |||||||||||||    
T  30426388 tggttcgaccattaacttattgatccagtaccctgtccgagtcgatgaccgagccgaattttaaaactatg 30426318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 615
Target Start/End: Original strand, 31513395 - 31513474
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaacta 615  Q
    ||||||| ||||||||| |||||| || || |||| ||||| || | ||||||| ||| ||| |||||||||||||||||    
T  31513395 caatgacccaatggttcaaccattgacccattgactcagtaccccttccgagtcaatgtccgagccgagttttaaaacta 31513474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 35305318 - 35305399
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  35305318 caatgactcagtggttcgaccattgacccagtgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 35305399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 3988786 - 3988704
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    ||||||| ||||| |||||||||| || || ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  3988786 caatgacccaatgattcgaccattgacccaatgacccagtatccctgccgagtcaatgaccgagccgagttttaaaactatga 3988704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 17513101 - 17513020
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  17513101 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 17513020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 7153517 - 7153436
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||||| ||||||||||||||| ||| |||||||||| ||  | |||||||||||||| ||||||||||||||||||||    
T  7153517 caatgactcagtggttcgaccattaa-tcattgacccagtacccccgtcgagtcgatgaccgagccgagttttaaaactatga 7153436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 16106740 - 16106818
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||| |||||||||||||||| || ||||||| ||  | ||||||||||||||||| |||||||||||||||||||    
T  16106740 tgactcagtggttcgaccattaacccagtgacccaatactcttgccgagtcgatgaccgagccgagttttaaaactatg 16106818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 16457781 - 16457851
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| |||||||||||| ||||||| || ||||||||| |||||||||| |||||||||||||||||||    
T  16457781 tggttccaccattaactcattgacccaatacccatgccgaatcgatgaccgagccgagttttaaaactatg 16457851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 24128834 - 24128752
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||| ||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| ||||||||||||||||||||    
T  24128834 caatgattcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatga 24128752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 23293208 - 23293289
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||| ||||||| |||||||||||||||||||    
T  23293208 caatgactcagtggttcgaccattcacccattgacccagtaccctcgccgagtcaatgaccgagccgagttttaaaactatg 23293289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 6065533 - 6065616
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    ||||||| || |||||||||||||||| || |||| ||||| || |||||| ||||||||||  ||||||||||||||||||||    
T  6065533 caatgacccagtggttcgaccattaacccagtgactcagtacccctgccgaatcgatgaccggaccgagttttaaaactatgat 6065616  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 37484481 - 37484403
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||| || |||| || ||||||||||||| | |||||||||  |||| |||||||||||||||||||    
T  37484481 tgactcaatggttcgatcaataacccaatgacccagtatccttaccgagtcgacaaccgagccgagttttaaaactatg 37484403  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 13016163 - 13016276
Alignment:
Q  150 gaatggaataaattaagattttattgtttggattgtcattataaaggtgggatgg-----aactcaatagcatgtattctatcactgattctcattttgc 244  Q
    |||||||||||||||| |||| ||||||||||| || |||| || | ||||||||     ||||||||   |||||||| |||||| | |||||||||||    
T  13016163 gaatggaataaattaaaatttcattgtttggatagtaattaaaaggatgggatggaatggaactcaatgaaatgtattccatcacttactctcattttgc 13016262  T
Q  245 ttaccctccaattt 258  Q
    ||||||||||||||    
T  13016263 ttaccctccaattt 13016276  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 19882020 - 19881939
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| ||  | |||||||||| ||  |||||||| ||||||| |||||||||||||||||||    
T  19882020 caatgactcactggttcgaccattgaccaagtgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 19881939  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 536 - 617
Target Start/End: Original strand, 32878736 - 32878817
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||||||||||||| || ||  ||||||||| ||  |||||||||| ||||| |||||||||||||||||||    
T  32878736 caatgactcattggttcgaccattgacccagggacccagtacccccgccgagtcgacgaccgagccgagttttaaaactatg 32878817  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 538 - 617
Target Start/End: Original strand, 10810582 - 10810661
Alignment:
Q  538 atgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||| || |||||||| ||||||| || |||||||||| |  |||||||||||||| || |||||||||||||||||||    
T  10810582 atgacccagtggttcgatcattaacccattgacccagtaccgttgccgagtcgatgatcgagccgagttttaaaactatg 10810661  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 550 - 617
Target Start/End: Original strand, 21800719 - 21800786
Alignment:
Q  550 ttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| || || |||||| ||| || | ||||||||||||||| |||||||||||||||||||    
T  21800719 ttcgaccattgacccagtgacccggtacccctaccgagtcgatgaccgagccgagttttaaaactatg 21800786  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 29523936 - 29523986
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||  |||||||||||||||| |||||||||||||||||||    
T  29523936 tgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 29523986  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 540 - 617
Target Start/End: Complemental strand, 18540735 - 18540658
Alignment:
Q  540 gactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| ||||||||||| | || || ||| |||||| || | |||||||||||| || |||||||||||||||||||    
T  18540735 gactcagtggttcgaccagtgacccaatgatccagtaccccttccgagtcgatgatcgagccgagttttaaaactatg 18540658  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 39678385 - 39678304
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| || |||||||||| ||||| |||||||||| |  ||||||||||||||| |   ||| |||||||||||||    
T  39678385 caatgactcagtgattcgaccattgactcattgacccagtacctctgccgagtcgatgacagaatcgaattttaaaactatg 39678304  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 547 - 617
Target Start/End: Original strand, 22315224 - 22315294
Alignment:
Q  547 tggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    ||||||||||||| ||||  ||||| ||||  | ||||||||| ||||||| | |||||||||||||||||    
T  22315224 tggttcgaccattgactcggtgacctagtacacctgccgagtcaatgaccgagacgagttttaaaactatg 22315294  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 37254859 - 37254937
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||| ||||||||| |||| | ||||| |||||||||| ||   ||||||| |||||||  ||||||||||||||||||    
T  37254859 tgacccaatggttcaaccaatgactcagtgacccagtaacctcaccgagtcaatgaccggtccgagttttaaaactatg 37254937  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 567 - 617
Target Start/End: Original strand, 37314987 - 37315037
Alignment:
Q  567 tgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||| ||  ||||| |||||||||| |||||||||||||||||||    
T  37314987 tgacccagtacccccgccgaatcgatgaccgagccgagttttaaaactatg 37315037  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 20907152 - 20907071
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||||||||||||||| ||||||| ||| || ||| |   | ||||||||| |||| ||||  |||||||||||||    
T  20907152 caatgactcaatggttcgaccagtaactcagtgatccggtagcatcgtcgagtcgattaccgtgccggtttttaaaactatg 20907071  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 23251050 - 23250969
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||||||  ||||||||||||| |  || |||||||||| ||  | |||||||||||| | || ||||||||||||||||    
T  23251050 caatgactcgctggttcgaccattgatccagtgacccagtacccccgtcgagtcgatgactgagctgagttttaaaactatg 23250969  T

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Target: scaffold0036 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 536 - 619
Target Start/End: Complemental strand, 51990 - 51907
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 619  Q
    |||||||||  ||||||||||||| ||||| |||||||||| ||  |||||||||||||||| |||||||||||||||||||||    
T  51990 caatgactctgtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatgat 51907  T

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Target: scaffold0070 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 12802 - 12720
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    |||||||||| ||||||||||||| || || |||||||||| ||  |||||||||||||||| | ||||||||||||||||||    
T  12802 caatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagtcgagttttaaaactatga 12720  T

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Target: scaffold0043 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 64423 - 64345
Alignment:
Q  539 tgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||| |||||||||||||||  ||||| |||||||||| | ||| |||||||||||||| |||||||||||||||||||    
T  64423 tgacccaatggttcgaccatcgactcagtgacccagtacctatgtcgagtcgatgaccgagccgagttttaaaactatg 64345  T

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Target: scaffold0116 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 540 - 617
Target Start/End: Complemental strand, 7916 - 7839
Alignment:
Q  540 gactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| |||||||||||||||| || |||| ||||| |  ||||||||||||||||| |||||||||||||||||||    
T  7916 gactcagtggttcgaccattaacccaatgactcagtacctttgccgagtcgatgaccgagccgagttttaaaactatg 7839  T

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Target: scaffold0242 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 536 - 618
Target Start/End: Original strand, 17874 - 17956
Alignment:
Q  536 caatgactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 618  Q
    ||||||||||||||||||||||||||| || |||| ||||| || ||||||||  |||  || || |||||||||||||||||    
T  17874 caatgactcaatggttcgaccattaacccaatgactcagtacccctgccgagtgaatggtcgagctgagttttaaaactatga 17956  T

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Target: scaffold0712 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 540 - 617
Target Start/End: Original strand, 4954 - 5030
Alignment:
Q  540 gactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| ||||||||||||||||  | |||||||  | || | ||||||||||||||| |||||||||||||||||||    
T  4954 gactcagtggttcgaccattaaccgagtgacccaacaccc-taccgagtcgatgaccgagccgagttttaaaactatg 5030  T

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Target: scaffold0709 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 540 - 617
Target Start/End: Original strand, 4974 - 5050
Alignment:
Q  540 gactcaatggttcgaccattaactcactgacccagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 617  Q
    |||||| ||||||||||||||||  | |||||||  | || | ||||||||||||||| |||||||||||||||||||    
T  4974 gactcagtggttcgaccattaaccgagtgacccaacaccc-taccgagtcgatgaccgagccgagttttaaaactatg 5050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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