View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_23 (Length: 479)
Name: NF20816_high_23
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_23 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 71 - 451
Target Start/End: Complemental strand, 42550176 - 42549797
Alignment:
| Q |
71 |
aactatgttcactatcttcgaatatcaagaacaagtcaagaatttaaagactgctatttcgaagaagacatttacaagtaacatcagagttgctcaaaat |
170 |
Q |
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| T |
42550176 |
aactatgatcactatcttcgaatatcaagaacaagt-aagaatttaaagactgcgatttcgaagaagacaattacaagtaacatcagagttgctcgaaat |
42550078 |
T |
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| Q |
171 |
atttcaaattacataacttctaaaatgagttatataaagtttatctaagaagtttttcaaatcagtagttataggtttttcaatgccaaaaacttaaatt |
270 |
Q |
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| T |
42550077 |
atttcaaattacataacttctaaaatgagttatataaagtttatctaagaagtttttcaaatcagtagttataggtttttcaatgccaaaaacttaaatt |
42549978 |
T |
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| Q |
271 |
tgaagagaaaacttgcacaagaaaacttttgggaagtagaagacacatgacatcatgcaacataggagttgttttattttcttatctataaattgtaaaa |
370 |
Q |
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| T |
42549977 |
tgaagagaaaacttgcacaagaaaacttttgagaagtagaagacacatgacatcatgcaacataggagttcgtttattgtcttatctatcaattgtaaaa |
42549878 |
T |
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| Q |
371 |
tcaaacttcaaacaaatgagttcattttcgttctttaaaactatactcaacagataaatacattctatcacagaataacat |
451 |
Q |
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| T |
42549877 |
tcaaatttcatacaaatgagtttattttcgttctttaaaactatactcaacagataaatacactctatcacagaataacat |
42549797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42550270 - 42550200
Alignment:
| Q |
1 |
agttctcccaaacaaaatatatttgccaaaaatttgtagaagcataaataaaaaattggtgttatgtgcgaa |
72 |
Q |
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| T |
42550270 |
agttctcccaaacaaaatatatttgccaaaaatttgtagaagcctaaat-aaaaattgatgttatgtgcgaa |
42550200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 402
Target Start/End: Original strand, 117047 - 117114
Alignment:
| Q |
335 |
ggagttgttttattttcttatctataaattgtaaaatcaaacttcaaacaaatgagttcattttcgtt |
402 |
Q |
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| T |
117047 |
ggagttggtttatttttttgtctataaattgtaaaatcgaacttcatgcaaatgagatcattttcgtt |
117114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 38538368 - 38538272
Alignment:
| Q |
279 |
aaacttgcacaagaaaacttttgggaagt-agaagacacatgacat-catgcaacataggagttgttttattttcttatctataaattgtaaaatcaa |
374 |
Q |
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| T |
38538368 |
aaacttgcagaagaagactcatgagaagttagaaaacacatgacattcatgcaacatatgagttagtttattt-cttgtctataaattgtaaaatcaa |
38538272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 55314050 - 55313962
Alignment:
| Q |
324 |
catgcaacataggagttgttttattttcttatctataaattgtaaaatcaaacttcaaacaaatgagttcattttcgttctttaaaacta |
413 |
Q |
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| T |
55314050 |
catgtaacatagaagttagtttatttt-ttgtctataaattgtaaaatcaaacttcacgtaaaagagttcattttcattcgataaaacta |
55313962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 30211871 - 30211827
Alignment:
| Q |
370 |
atcaaacttcaaacaaatgagttcattttcgttctttaaaactat |
414 |
Q |
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| T |
30211871 |
atcaaacttcatacaaatgagttcatttttgttcgataaaactat |
30211827 |
T |
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