View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_24 (Length: 477)
Name: NF20816_high_24
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Original strand, 7498133 - 7498582
Alignment:
| Q |
16 |
tttcaggcagtggaaaattgagttgggcaaatgaagacggtactagcacaatcgatatacgtgaaggagatgtaggaagtctcacagaaggatctgtttt |
115 |
Q |
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| T |
7498133 |
tttcaggcagtggaaaattgagttgggcaaatgaagacggtactagcacaatcgatatacgtgaaggagatgtaggaagtctcacagaaggatctgtttt |
7498232 |
T |
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| Q |
116 |
ctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacatttgtaagcttcttgcacttg |
215 |
Q |
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| T |
7498233 |
ctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacatttgtaagcttcttgcacttg |
7498332 |
T |
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| Q |
216 |
tattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtttgaacaaaaattgcaggatccatcaattggtgcttactcaagaa |
315 |
Q |
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| T |
7498333 |
tattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtt--aacaaaaattgcaggatccatcaattggtgcttactcaagaa |
7498430 |
T |
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| Q |
316 |
tcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaaacaataaatgtatagttg |
415 |
Q |
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| T |
7498431 |
tcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaaacaatcaatgtatagttg |
7498530 |
T |
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| Q |
416 |
gttccattttgagccaaaattgttgagtgattttgacatgtttggatattct |
467 |
Q |
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| T |
7498531 |
gttccattttgaggcaaaattgttgagtgattttgacatgtttggatattct |
7498582 |
T |
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