View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_high_25 (Length: 471)

Name: NF20816_high_25
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_high_25
NF20816_high_25
[»] chr2 (4 HSPs)
chr2 (426-463)||(9444843-9444880)
chr2 (432-460)||(5726282-5726310)
chr2 (431-463)||(27024565-27024597)
chr2 (432-460)||(38997254-38997282)
[»] chr6 (2 HSPs)
chr6 (278-329)||(17239034-17239085)
chr6 (427-460)||(11988969-11989002)
[»] chr8 (3 HSPs)
chr8 (128-173)||(15118368-15118413)
chr8 (431-460)||(33730640-33730669)
chr8 (432-460)||(41981622-41981650)
[»] chr4 (2 HSPs)
chr4 (428-460)||(43471691-43471723)
chr4 (428-460)||(3170780-3170812)
[»] chr3 (3 HSPs)
chr3 (428-460)||(27066974-27067006)
chr3 (431-460)||(30251500-30251529)
chr3 (431-460)||(35748310-35748339)
[»] chr5 (4 HSPs)
chr5 (429-460)||(40633531-40633562)
chr5 (432-460)||(12648951-12648979)
chr5 (432-460)||(13504742-13504770)
chr5 (432-460)||(34451404-34451432)
[»] chr7 (6 HSPs)
chr7 (430-460)||(30076525-30076555)
chr7 (431-460)||(26579716-26579745)
chr7 (431-460)||(35767629-35767658)
chr7 (431-460)||(46898015-46898044)
chr7 (432-460)||(33695821-33695849)
chr7 (432-460)||(47740331-47740359)
[»] chr1 (3 HSPs)
chr1 (431-461)||(26524888-26524918)
chr1 (431-460)||(4808799-4808828)
chr1 (432-460)||(7561528-7561556)


Alignment Details
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 9444880 - 9444843
Alignment:
Q  426 aaattaggtgacaactagggtatccatggaagaataat 463  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9444880 aaattaggtgacaactagggtatccatggaagaataat 9444843  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Complemental strand, 5726310 - 5726282
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  5726310 ggtgacaactagggtatccatggaagaat 5726282  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 463
Target Start/End: Complemental strand, 27024597 - 27024565
Alignment:
Q  431 aggtgacaactagggtatccatggaagaataat 463  Q
    ||||||||||||||||| |||||||||||||||    
T  27024597 aggtgacaactagggtacccatggaagaataat 27024565  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Complemental strand, 38997282 - 38997254
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  38997282 ggtgacaactagggtatccatggaagaat 38997254  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 17239085 - 17239034
Alignment:
Q  278 ggtaatgatttgtatgttgaattgcatgcttcaatgattgtaattgaagtcg 329  Q
    ||||||| |||||||||||||||||| ||| ||||||||| |||||||||||    
T  17239085 ggtaatgctttgtatgttgaattgcacgctccaatgattgcaattgaagtcg 17239034  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 11988969 - 11989002
Alignment:
Q  427 aattaggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||| ||||||||||||    
T  11988969 aattaggtgacaactagggtacccatggaagaat 11989002  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 15118368 - 15118413
Alignment:
Q  128 aaatccttctatatgattaatgcatacacattcttttggttatgat 173  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||    
T  15118368 aaatccttgtatatgattaatgcatacacacttttttggttatgat 15118413  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 33730640 - 33730669
Alignment:
Q  431 aggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||    
T  33730640 aggtgacaactagggtatccatggaagaat 33730669  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Complemental strand, 41981650 - 41981622
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  41981650 ggtgacaactagggtatccatggaagaat 41981622  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 43471691 - 43471723
Alignment:
Q  428 attaggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||||||    
T  43471691 attaggtgacaactagggtatccatggaagaat 43471723  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 3170812 - 3170780
Alignment:
Q  428 attaggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||| ||||||||||||||||    
T  3170812 attaggtgacaactagagtatccatggaagaat 3170780  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 27066974 - 27067006
Alignment:
Q  428 attaggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||||||    
T  27066974 attaggtgacaactagggtatccatggaagaat 27067006  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 30251500 - 30251529
Alignment:
Q  431 aggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||    
T  30251500 aggtgacaactagggtatccatggaagaat 30251529  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 35748310 - 35748339
Alignment:
Q  431 aggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||    
T  35748310 aggtgacaactagggtatccatggaagaat 35748339  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 40633562 - 40633531
Alignment:
Q  429 ttaggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||||    
T  40633562 ttaggtgacaactagggtatccatggaagaat 40633531  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Complemental strand, 12648979 - 12648951
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  12648979 ggtgacaactagggtatccatggaagaat 12648951  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Original strand, 13504742 - 13504770
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  13504742 ggtgacaactagggtatccatggaagaat 13504770  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Complemental strand, 34451432 - 34451404
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  34451432 ggtgacaactagggtatccatggaagaat 34451404  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 460
Target Start/End: Original strand, 30076525 - 30076555
Alignment:
Q  430 taggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||||    
T  30076525 taggtgacaactagggtatccatggaagaat 30076555  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 26579716 - 26579745
Alignment:
Q  431 aggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||    
T  26579716 aggtgacaactagggtatccatggaagaat 26579745  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 35767658 - 35767629
Alignment:
Q  431 aggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||    
T  35767658 aggtgacaactagggtatccatggaagaat 35767629  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 46898015 - 46898044
Alignment:
Q  431 aggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||    
T  46898015 aggtgacaactagggtatccatggaagaat 46898044  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Original strand, 33695821 - 33695849
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  33695821 ggtgacaactagggtatccatggaagaat 33695849  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Original strand, 47740331 - 47740359
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  47740331 ggtgacaactagggtatccatggaagaat 47740359  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 461
Target Start/End: Original strand, 26524888 - 26524918
Alignment:
Q  431 aggtgacaactagggtatccatggaagaata 461  Q
    |||||||||||||||||||||||||||||||    
T  26524888 aggtgacaactagggtatccatggaagaata 26524918  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 4808828 - 4808799
Alignment:
Q  431 aggtgacaactagggtatccatggaagaat 460  Q
    ||||||||||||||||||||||||||||||    
T  4808828 aggtgacaactagggtatccatggaagaat 4808799  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Original strand, 7561528 - 7561556
Alignment:
Q  432 ggtgacaactagggtatccatggaagaat 460  Q
    |||||||||||||||||||||||||||||    
T  7561528 ggtgacaactagggtatccatggaagaat 7561556  T

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