View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_26 (Length: 465)
Name: NF20816_high_26
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 7867590 - 7868024
Alignment:
| Q |
13 |
aatatgaatctccttacccatataggctccaactaccacaactgcagctaagccagtcataaatatacatatctgaaaattacagtaagatgaagtcaat |
112 |
Q |
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| T |
7867590 |
aatatgaatctccttacccatatatgctccaactaccacaactgcagctaagccagtcataaatatacatatctgaaaattacagtaagatgaagtcaat |
7867689 |
T |
|
| Q |
113 |
gaaaatttactccaaatcaagcatttgacagtcacacgatttagatcgttgaaataagatcgaacgatccaagtacggactattataaattaagtaaaaa |
212 |
Q |
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| T |
7867690 |
gaaaatttactccaaatcaagcatttgacagtcacacgatttagatcgttgaaataagatcgaacgatccaagtacggactattataaattaagtaaaaa |
7867789 |
T |
|
| Q |
213 |
atgcaaagtcagaacataagtcatccaagtatcttaatatgacgatcgaatttatgactacatgtctatgcgggtgtagggtttcaaagtcctaattgtc |
312 |
Q |
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| T |
7867790 |
atgcaaagtcagaacataagtcatccaagcatcttaatatgacgatcgaatttatgactacatgtctatgcgggtgtagggtttcaaagtcctaattgtc |
7867889 |
T |
|
| Q |
313 |
aagagtcacgttttttgacaaactagaattgtcaaatcatgatcagacaactcactttcaaacttttataaattgagacaaaaatacaaagttagattat |
412 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7867890 |
aagagtcacgttttttaacaaactagaactgtcaaatcatgatcagacaactcactttcaaacttttataaattgagacaaaaatacaaagttagaatat |
7867989 |
T |
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| Q |
413 |
gaattgtctgatcttgatctcacattccatatcag |
447 |
Q |
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| T |
7867990 |
gaattgtctgatcttgatctcacgttccatatcag |
7868024 |
T |
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