View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_28 (Length: 460)
Name: NF20816_high_28
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_28 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 17753932 - 17754391
Alignment:
| Q |
1 |
tgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753932 |
tgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
17754031 |
T |
|
| Q |
101 |
tgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcatatccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| ||||||||||||||||||| |
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| T |
17754032 |
tgaagcctgacactgataatgtatgtgaacgttatatggtggtaggtcttattattcttttcttttccattttatggtcttaaccaagttcatatccttg |
17754131 |
T |
|
| Q |
201 |
caggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754132 |
caggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagc |
17754231 |
T |
|
| Q |
301 |
tatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataactctggatc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||| |
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| T |
17754232 |
tatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacaggttgttagatagttcttcaaagattggggacagcaataactctggatc |
17754331 |
T |
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| Q |
401 |
accattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagt |
460 |
Q |
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| T |
17754332 |
accattttcggaagaagtggtagcaaatggacatatgatgagtcgtgcctcaagtccagt |
17754391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 17762919 - 17763378
Alignment:
| Q |
1 |
tgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17762919 |
tgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
17763018 |
T |
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| Q |
101 |
tgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcatatccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| ||||||||||||||||||| |
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| T |
17763019 |
tgaagcctgacactgataatgtatgtgaacgttatatggtggtaggtcttattattcttttcttttccattttatggtcttaaccaagttcatatccttg |
17763118 |
T |
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| Q |
201 |
caggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763119 |
caggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagc |
17763218 |
T |
|
| Q |
301 |
tatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataactctggatc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||| |
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| T |
17763219 |
tatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacaggttgttagatagttcttcaaagattggggacagcaataactctggatc |
17763318 |
T |
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| Q |
401 |
accattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagt |
460 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
17763319 |
accattttcggaagaagtggtagcaaatggacatatgatgagtcgtgcctcaagtccagt |
17763378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 15735883 - 15736342
Alignment:
| Q |
1 |
tgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15735883 |
tgggccaaagattacattgagaactggagtgcttttgctcctgatttcaaagagatcgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
15735982 |
T |
|
| Q |
101 |
tgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcatatccttg |
200 |
Q |
| |
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|||| |||| |||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
15735983 |
tgaatactgagactgataaggtatgtgaacgttatatggtcatagtacttattattctttcattttccattttatggtctcaaccaagttcatatccttg |
15736082 |
T |
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| Q |
201 |
caggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgaggaagagc |
300 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15736083 |
caggtaaaaggatctgatgtcaatgaagacgaggacgttgacattgagacagtagagaaggatcctgctttcagcgactctgatatgtccgaggaagagc |
15736182 |
T |
|
| Q |
301 |
tatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataactctggatc |
400 |
Q |
| |
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|||||||||| || | ||||||| | |||||||||||||||||| |||| ||| ||||| |||| |||||| |||||||||| ||||||||| ||||| |
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| T |
15736183 |
tatgttatctgccagcatctccctgccgcgatgttcctgaacaggaagacaggtttttagaaagttcttcaaagattggggacagcaataactccggatc |
15736282 |
T |
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| Q |
401 |
accattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagt |
460 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
15736283 |
accattttccgaagaagtggtagcaaatggacatatgatgagtcatgcctcaagtccagt |
15736342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 162 - 458
Target Start/End: Original strand, 17740109 - 17740405
Alignment:
| Q |
162 |
cttttccattttatagtctcaaccaagttcatatccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaagg |
261 |
Q |
| |
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||||||| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
17740109 |
cttttcctttttatggtctcaatcaagttcatatccttgcaggtaaaaggatctgatgtcaatgaagatgaggacgttgacattgtgacagtcgagaagg |
17740208 |
T |
|
| Q |
262 |
atcctgctttcagcgactctgatatgtccgaggaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttaga |
361 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | | ||||| |
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| T |
17740209 |
atcctaatttcagcgactctgatatgtctgaggaagagctacgttatctaccagtatctcccattcccgatgttcctgaacaggaagacaggcttttaga |
17740308 |
T |
|
| Q |
362 |
tagtttttcaaatattggggacaacaataactctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtcca |
458 |
Q |
| |
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||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
17740309 |
tagttcttcaaagattggggacagcaataactctggatcaccattttcagaagaagtggtagcaaatggacacatgatgagtcatgcctcaagtcca |
17740405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 17739778 - 17739931
Alignment:
| Q |
1 |
tgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17739778 |
tgggccaaagagtacattgagaactggagtgcttttgctcctgatttcaaagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatt |
17739877 |
T |
|
| Q |
101 |
tgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatatta |
154 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
17739878 |
tgaatcctgacactgataatgtatgtgaacattatatggtcataggtcttatta |
17739931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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