View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_29 (Length: 459)
Name: NF20816_high_29
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 41133752 - 41133573
Alignment:
| Q |
19 |
atattatttgttctatttttagcttatgtttttgtttgtgctttgtcaggataacgttggacagattgatcacttacacgacctaaaaccacttctagat |
118 |
Q |
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| T |
41133752 |
atattatttgttctatttttagcttatgtttttgtttgtgctttgtcaggataacgttggacagattgatcacttacacgacctaaaaccacttctagat |
41133653 |
T |
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| Q |
119 |
ttggtcctttatgtttttggcattagtttgttgagtacttcacattaccacattgttgttattcctttatctgcaaatac |
198 |
Q |
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| T |
41133652 |
ttggtcctttatgtttttggcattagtttgttgagtacttcacattaccacattgttgttattcctttttctgcaaatac |
41133573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 257 - 432
Target Start/End: Complemental strand, 41133514 - 41133339
Alignment:
| Q |
257 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttatcgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
356 |
Q |
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| T |
41133514 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttattgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
41133415 |
T |
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| Q |
357 |
aatcaaaagtaagttcttttctttctttccttatacaaaggaccttttggtccaatttcatgttttgtatgtgtta |
432 |
Q |
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| T |
41133414 |
aatcaaaagtaagttcttttctttctttccttatacaaaggacattttggtccaatttcatgttttgtatgtgtta |
41133339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 18575419 - 18575471
Alignment:
| Q |
316 |
gcttcaaagccagtttacacaggttgaacttcgcagccttaaatcaaaagtaa |
368 |
Q |
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| T |
18575419 |
gcttcaaaaccagtttacacaagttgagcttcgcagcttaaaatcacaagtaa |
18575471 |
T |
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