View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_high_30 (Length: 458)

Name: NF20816_high_30
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_high_30
NF20816_high_30
[»] chr2 (1 HSPs)
chr2 (1-458)||(5364221-5364678)


Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 5364221 - 5364678
Alignment:
Q  1 tcctccccattctccgtcaaagtcggcctcgctcaaatgctccgcggcggcgtcatcatggacgtcgtcaacgccgaacaagctcgcatcgctgaagaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5364221 tcctccccattctccgtcaaagtcggcctcgctcaaatgctccgcggcggcgtcatcatggacgtcgtcaacgccgaacaagctcgcatcgctgaagaag 5364320  T
Q  101 ctggtgcttgcgccgtcatggccttggagcgtgtccccgccgacatccgtgctcaaggcggtgttgctcgtatgtccgaccctcaactcatcaaagaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5364321 ctggtgcttgcgccgtcatggccttggagcgtgtccccgccgacatccgtgctcaaggcggtgttgctcgtatgtccgaccctcaactcatcaaagaaat 5364420  T
Q  201 caaagccgccgtcaccatccccgtcatggcgaaagcccgtatcggtcatttcgttgaagctcagatccttgaatctctcggaatcgattacgtcgatgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5364421 caaagccgccgtcaccatccccgtcatggcgaaagcccgtatcggtcatttcgttgaagctcagatccttgaatctctcggaatcgattacgtcgatgag 5364520  T
Q  301 agcgaagttcttacccttgctgatgaagacaatcacatcaacaaacacaatttccgtattcctttcgtttgtggctgtcgtaacctcggtgaagctcttc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5364521 agcgaagttcttacccttgctgatgaagacaatcacatcaacaaacacaatttccgtattcctttcgtttgtggctgtcgtaacctcggtgaagctcttc 5364620  T
Q  401 gccgaattcgcgaaggtgctgcgatgattcgtaccaaaggtgaagctggaactggtaa 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5364621 gccgaattcgcgaaggtgctgcgatgattcgtaccaaaggtgaagctggaactggtaa 5364678  T

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