View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_35 (Length: 422)
Name: NF20816_high_35
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 2796164 - 2795759
Alignment:
| Q |
1 |
actatggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagaggactcaattcagtc |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2796164 |
actatggccagtaacaacaattcccataccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagaggactcaattcagtc |
2796065 |
T |
|
| Q |
101 |
catgctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagcagtggataccaaaa |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2796064 |
catgctcctctttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagcagtggataccaaaa |
2795965 |
T |
|
| Q |
201 |
cttgaacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccatatggcagaagatcttt |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795964 |
cttgaacatgtccagaagcaaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccatatggcagaagatcttt |
2795865 |
T |
|
| Q |
301 |
gagatcattgctcttcacaagatcggtatgactatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagagtgtcatttgcaagtgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795864 |
gagatcattgctcttcacaagatcggtatgactatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagagtgtcatttgcaagtgca |
2795765 |
T |
|
| Q |
401 |
gtatct |
406 |
Q |
| |
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|||||| |
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| T |
2795764 |
gtatct |
2795759 |
T |
|
Back To:
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Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 406
Target Start/End: Complemental strand, 29263673 - 29263272
Alignment:
| Q |
5 |
tggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagaggactcaattcagtccatg |
104 |
Q |
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||||| |||| || ||||||||||||| | |||||||| || ||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||| | |
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| T |
29263673 |
tggcccgtaagaataattccctcaccataagagtcatattgaggccttccggcacgacccaacatctgcataacgtcaagtggactcagttcagtccagg |
29263574 |
T |
|
| Q |
105 |
ctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagcagtggataccaaaacttg |
204 |
Q |
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| T |
29263573 |
cccccttttcgggattataaatctgtgtccctttaattataacagtgtgagctggaagattcacaccccatgcaagggtggcagtggataccaaaacttg |
29263474 |
T |
|
| Q |
205 |
aacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccatatggcagaagatctttgaga |
304 |
Q |
| |
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| |||||||| |||||| ||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
29263473 |
agcatgtccatcagcgaacagatcctcaacaagttggcgatctgtcctcgtcataccagcatgatgaatagcaaaaccatacggcagaagatctttaagg |
29263374 |
T |
|
| Q |
305 |
tcattgctcttcacaagatcggtatgactatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagagtgtcatttgcaagtgcagtat |
404 |
Q |
| |
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||| | |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| || |
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| T |
29263373 |
tcactactcttcacaagatcagtatgagtatgaagaatctcacggcttgcactatcttctttaaggaacctaccaagagtatcatctgcgagtgcagcat |
29263274 |
T |
|
| Q |
405 |
ct |
406 |
Q |
| |
|
|| |
|
|
| T |
29263273 |
ct |
29263272 |
T |
|
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