View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_38 (Length: 401)
Name: NF20816_high_38
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 17436112 - 17436455
Alignment:
| Q |
16 |
gtaattacagtgacatctctagatggtgcaaatgtgaacatagttttgtcacttgcgttcaacaatggggaatatagtggtagcactttggagattcaag |
115 |
Q |
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| T |
17436112 |
gtaattacagtgacatctctagatggtgcaaatgtgaacatagttttgtcacttgtgttcaacaatggggaatatagtggtagcactttggagatacaag |
17436211 |
T |
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| Q |
116 |
gtaatagtcgtcaacgtgagaattcaagagagctatctgttgtttctggaacaggaaggtttcgatatgcaagagggtttgttgtgtttgaaactatgtc |
215 |
Q |
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| T |
17436212 |
gtaatagtcgtcaacgtgagaattcaagagagctctctgttgtttctggaacaggaaggtttcgatatgcaagagggtttgttgtgtttgaaactatgtc |
17436311 |
T |
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| Q |
216 |
ttatgatgctccaagtgaacgttctgtcattaggttgactataactttggcactaccttgagaaaattatgtattatttctatgcttaatgcttgttgat |
315 |
Q |
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| T |
17436312 |
ttatgatgctccaagtgaacgttctgtcattaggttgaccataactttggcactaccttgagaaaattatgtattatttatatggttaatgcttgttgat |
17436411 |
T |
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| Q |
316 |
gtataatatcatatggatgtatgatgtcatacaagctttatata |
359 |
Q |
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| T |
17436412 |
gtataatatcatatggatgtatgatgtcatacaagctttatata |
17436455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 17432242 - 17432515
Alignment:
| Q |
19 |
attacagtgacatctctagatggtgcaaatgtgaacatagttttgtcacttgcgttcaacaatggggaatatagtggtagcactttggagattcaaggta |
118 |
Q |
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| T |
17432242 |
attacagtaacatctcttgatggttcaaatgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggagattcaaggtg |
17432341 |
T |
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| Q |
119 |
atagtcgtcaacgtgagaattcaagagagctatctgttgtttctggaacaggaaggtttcgatatgcaagagggtttgttgtgtttgaaactatgtctta |
218 |
Q |
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| T |
17432342 |
ctagtcgacaacgcgaaaattcaagagagctttctgttgtttccggaacaggaaggtttcgatatgcaagaggatttgttgtgtttgaaactgtatctta |
17432441 |
T |
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| Q |
219 |
tgatgctccaagtgaacgttctgtcattaggttgactataactttggc---actaccttgagaaaattatgtat |
289 |
Q |
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| T |
17432442 |
tgatgattcaactaatcattctgttcttcgtttgactgtaactttggctataccatcttgagaaaattatgtat |
17432515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 17436477 - 17436513
Alignment:
| Q |
356 |
tataaaggaataatttatcttgtcttgttactagtat |
392 |
Q |
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| T |
17436477 |
tataaaggaataatttatcttgtcttgttactagtat |
17436513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 17432516 - 17432571
Alignment:
| Q |
304 |
atgcttgttgatgtataatatcatatggatgtatgatgtcatacaagctttatata |
359 |
Q |
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| T |
17432516 |
atgcttgttggtaaataatatcatatggatgtatgatatctgacaagctttatata |
17432571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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