View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_4 (Length: 781)
Name: NF20816_high_4
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 80 - 769
Target Start/End: Complemental strand, 27796781 - 27796098
Alignment:
| Q |
80 |
tttttaaaattattattgatgacaatgaattagtgtcattgttgtggctggtgtccgtgtctagttcagtgtcgcaaaagtgaaaaatgttttagctttt |
179 |
Q |
| |
|
||||||||| || |||||||| | |||| ||||||||||||||||| | |||||| |||||||||||||||| ||| ||||||||||||| ||||||||| |
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| T |
27796781 |
tttttaaaactaatattgatgtcgatgagttagtgtcattgttgtgtcgggtgtctgtgtctagttcagtgttgcagaagtgaaaaatgtgttagctttt |
27796682 |
T |
|
| Q |
180 |
caatgcaataacatggttattcctttctaatgaactctgttttttgtgtatgtttgatacagataaggaggtcttcataccatgatgtgattagggtgaa |
279 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27796681 |
caatgcaataacctggttagtcctttctaatgaactctgttttttgtgt------gatatagataaggaggtcttcataccatgatgtgattagggtgaa |
27796588 |
T |
|
| Q |
280 |
tgagattcagaaagtgttggacataacaggtgttcaaacctatattatcaacagtgcaagggttgtgttcttgaatgagaggcctcagccaaggcccgga |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27796587 |
tgagattcagaaagtgttggacataacaggtgttcaaacctatattatcaacagtgcaagggttgtgttcttgaatgagaggcctcagccaaggcccgga |
27796488 |
T |
|
| Q |
380 |
aaaggtgtcaccaacacttgtgaagtctgcgagcgtagccttctcgattcctttcgattctgttctcttggctgcaaggtatttttacattccttcacat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27796487 |
aaaggtgtcaccaacacttgtgaagtctgcgagcgtagccttctcgattcctttcgattctgttctcttggctgcaaggtatttttacattccttcacat |
27796388 |
T |
|
| Q |
480 |
aatgtcttccccttctaaccatttgaataagagtaactcccaaaatagtagtaataataatccgttaccaaacttttggccgttaaatcaaggattttga |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27796387 |
aatgtcttccccttctaaccatttgaataagagtaactcccaaaatagtagtaataataatccgtcaccaaacttttggccgttaaatcaaggattttga |
27796288 |
T |
|
| Q |
580 |
tgtttcaatttgttaatgatgattgaggttgcattgatcacattttttgattgcaactttggatattgtcaagacctcaatgtaatgcattgaggtcaca |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27796287 |
tgtttcaatttgttaatgatgattgaggttgcattgatcacattttttgattgcaattttggatattgtcaagacctcaatgtaatgcattgaggtcaca |
27796188 |
T |
|
| Q |
680 |
tcaactaaatttgtccacataaccatagtctataatagctgcatttgaccgtaattctctaaaatacaagattcaacatcattagtttca |
769 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
27796187 |
tcaactacatttgtccacataaccatagtctataatagctgcatttgactgtaattctctaaaatacaagactcaacatcattattttca |
27796098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 238 - 460
Target Start/End: Complemental strand, 12667468 - 12667246
Alignment:
| Q |
238 |
acagataaggaggtcttcataccatgatgtgattagggtgaatgagattcagaaagtgttggacataacaggtgttcaaacctatattatcaacagtgca |
337 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||||| |
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| T |
12667468 |
acagattaggaggtcttcataccatgatgtgataagggtgaatgagattcagaaacacttggacattgctggtgttcaaacctacattatcaacagtgca |
12667369 |
T |
|
| Q |
338 |
agggttgtgttcttgaatgagaggcctcagccaaggcccggaaaaggtgtcaccaacacttgtgaagtctgcgagcgtagccttctcgattcctttcgat |
437 |
Q |
| |
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||||||||||| |||||||| |||||||| |||||||| || ||||||||||| |||||||||||||| || |||||||||||||| |||||||| || | |
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| T |
12667368 |
agggttgtgtttttgaatgaaaggcctcaaccaaggccagggaaaggtgtcacaaacacttgtgaagtttgtgagcgtagccttcttgattccttccggt |
12667269 |
T |
|
| Q |
438 |
tctgttctcttggctgcaaggta |
460 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
12667268 |
tctgttctcttggttgcaaggta |
12667246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 1252573 - 1252726
Alignment:
| Q |
240 |
agataaggaggtcttcataccatgatgtgattagggtgaatgagattcagaaagtgttggacataacaggtgttcaaacctatattatcaacagtgcaag |
339 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||| |||||| |||||| | |||||||||||||| |||||||| || |||| |||||||||| |
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| T |
1252573 |
agataagaaggtcttcatatcatgatgtgataagggtatctgagatacagaaatttttggacataacaggggttcaaacatacgttataaacagtgcaaa |
1252672 |
T |
|
| Q |
340 |
ggttgtgttcttgaatgagaggcctcagccaaggcccggaaaaggtgtcaccaa |
393 |
Q |
| |
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|||||||||||||||| ||||||||||| | ||| || |||||||||||||| |
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| T |
1252673 |
aattgtgttcttgaatgaaaggcctcagcctaagcctggcaaaggtgtcaccaa |
1252726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 240 - 461
Target Start/End: Complemental strand, 30094410 - 30094189
Alignment:
| Q |
240 |
agataaggaggtcttcataccatgatgtgattagggtgaatgagattcagaaagtgttggacataacaggtgttcaaacctatattatcaacagtgcaag |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||| |||||| | |||||||| ||| |||||||| ||| |||| |||||||||| |
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| T |
30094410 |
agataaggaggtcttcataccatgatgtgataagggtttctgagatacagaaatttctggacatagcagaggttcaaacatatgttataaacagtgcaaa |
30094311 |
T |
|
| Q |
340 |
ggttgtgttcttgaatgagaggcctcagccaaggcccggaaaaggtgtcaccaacacttgtgaagtctgcgagcgtagccttctcgattcctttcgattc |
439 |
Q |
| |
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| ||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||| || ||||||| || || |||||||| |||||||| | ||| |
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| T |
30094310 |
gattgtgtttttgaatgaaaggcctcaacctaggcctggaaaaggggtcaccaacacctgccaagtctgtgaccgcagccttcttgattccttcagcttc |
30094211 |
T |
|
| Q |
440 |
tgttctcttggctgcaaggtat |
461 |
Q |
| |
|
|| |||||||| || ||||||| |
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| T |
30094210 |
tgctctcttggttgtaaggtat |
30094189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 41629730 - 41629599
Alignment:
| Q |
240 |
agataaggaggtcttcataccatgatgtgattagggtgaatgagattcagaaagtgttggacataacaggtgttcaaacctatattatcaacagtgcaag |
339 |
Q |
| |
|
||||||| || ||||| || ||||||||| || | ||| ||||||||||||||||||||||||| || || ||||| ||| | || |||||||| || |
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|
| T |
41629730 |
agataagaagatcttcgtatcatgatgtggttcgtgtgtcagagattcagaaagtgttggacataagtggagtgcaaacatatgtgataaacagtgctag |
41629631 |
T |
|
| Q |
340 |
ggttgtgttcttgaatgagaggcctcagccaa |
371 |
Q |
| |
|
||| |||||||||||| |||||||| |||| |
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|
| T |
41629630 |
agttttgttcttgaatgttaggcctcaaccaa |
41629599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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