View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_41 (Length: 395)
Name: NF20816_high_41
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_41 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 180 - 377
Target Start/End: Original strand, 101469 - 101667
Alignment:
| Q |
180 |
tcttaatgcctaatgacattgcctatcaggatgctttctaatagggaatcggctaaactctcacgaaatagaaagcaaggtcgggt-gttgatgaatgct |
278 |
Q |
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| T |
101469 |
tcttaacgcctaatgacattgcctctcaggatgctttctaatagggaatcggctaaactctcaggaaatagaaagcaagctcgtattgttgatgaatgct |
101568 |
T |
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| Q |
279 |
ataaatctttggggctataaatcatttggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggt |
377 |
Q |
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| T |
101569 |
ataaatctttggggccataaatcatttggatatgaatgctagctatggtggatttgcatctgctttgattaagaatcctgtttgggttatgaacgtggt |
101667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 101298 - 101382
Alignment:
| Q |
5 |
agacatttaatccttttgaacttggaaatatgttgttac------gtcaacgacaagtggatccttaggcgaagaggaggcttat |
83 |
Q |
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| T |
101298 |
agacatctgatccttctgaacttggaaacctgttgttacaaccaggtcaacgacaagtggatcctcaggcgaagatgaggcttat |
101382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 45785042 - 45784970
Alignment:
| Q |
305 |
tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggt |
377 |
Q |
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| T |
45785042 |
tggatatgaatgctaacttgggtggatttgcatctgctttagttaagaatcctgtttgggttatgaatgtggt |
45784970 |
T |
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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 47544116 - 47544190
Alignment:
| Q |
81 |
tatgaatggagacaataacgcttctaatgcaaaacgagttaagaggtaacaatattctctgagttcaatatgttt |
155 |
Q |
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| T |
47544116 |
tatgaatagagacaataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgttt |
47544190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 47528128 - 47528179
Alignment:
| Q |
183 |
taatgcctaatgacattgcctatcaggatgctttctaatagggaatcggcta |
234 |
Q |
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| T |
47528128 |
taatgcctaatgacattgcctttcaggatgctctctaatagggaatcagcta |
47528179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 10281577 - 10281517
Alignment:
| Q |
308 |
atatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttat |
368 |
Q |
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| T |
10281577 |
atatgaatgctaactacggtggatttgcatttgctttgattaagaaccatgtttgggttat |
10281517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 47544247 - 47544316
Alignment:
| Q |
169 |
tccaaacatggtcttaatgcctaatgacattgcc-tatcaggatgctttctaatagggaatcggctaaac |
237 |
Q |
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| T |
47544247 |
tccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaac |
47544316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 503700 - 503634
Alignment:
| Q |
305 |
tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaa |
371 |
Q |
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| T |
503700 |
tggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaa |
503634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 28638624 - 28638560
Alignment:
| Q |
307 |
gatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaa |
371 |
Q |
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| T |
28638624 |
gatatgaatgcttacttgggaggatttgcagctgcaatgattgatgatccagtttgggtcatgaa |
28638560 |
T |
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