View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_45 (Length: 391)
Name: NF20816_high_45
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 50813548 - 50813197
Alignment:
| Q |
22 |
cttaattgaacaattttcttagataattcctaacgatnnnnnnnncttaattaaacaattttcttaaattatccctgaacaattatcaaagagaaaattc |
121 |
Q |
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| T |
50813548 |
cttaattgaacaattttcttagataattcctaacgataaaaaaaacttaattaaacaattttcttaaattatccctgaacaattatcaaagagaaaattc |
50813449 |
T |
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| Q |
122 |
taacttgagatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttattataatctaacttgagaattataatctcctattgacag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50813448 |
taacttgagatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttattataatctaacttgagaattataatctcctattgacag |
50813349 |
T |
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| Q |
222 |
caaaactacacaactgcatgttctgcggcatattgggttggggtactgaatttgttacaggtaaatttacctctagtggtattgtttttcttgattgaac |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50813348 |
caaaactacacaactgcatgttctgcggcatattgggttggggtactgaatttgttacaggtaaatttacctctagtggtattgtttttcttgattgaac |
50813249 |
T |
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| Q |
322 |
attattatatctcattgtcactcaacttttatgaatttgtatttgaatgtatgtt |
376 |
Q |
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| T |
50813248 |
a---ttatatctcattgtcactcaacttttatgaatttgtatttgaatgtatgtt |
50813197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 22 - 376
Target Start/End: Original strand, 50862316 - 50862667
Alignment:
| Q |
22 |
cttaattgaacaattttcttagataattcctaacgatnnnnnnnncttaattaaacaattttcttaaattatccctgaacaattatcaaagagaaaattc |
121 |
Q |
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| T |
50862316 |
cttaattgaacaattttcttagataattcctaacgataaaaaaaacttaattaaacaattttcttaaattatccctgaacaattatcaaagagaaaattc |
50862415 |
T |
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| Q |
122 |
taacttgagatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttattataatctaacttgagaattataatctcctattgacag |
221 |
Q |
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| T |
50862416 |
taacttgagatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttattataatctaacttgagaattataatctcctattgacag |
50862515 |
T |
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| Q |
222 |
caaaactacacaactgcatgttctgcggcatattgggttggggtactgaatttgttacaggtaaatttacctctagtggtattgtttttcttgattgaac |
321 |
Q |
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| T |
50862516 |
caaaactacacaactgcatgttctgcggcatattgggttggggtactgaatttgttacaggtaaatttacctctagtggtattgtttttcttgattgaac |
50862615 |
T |
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| Q |
322 |
attattatatctcattgtcactcaacttttatgaatttgtatttgaatgtatgtt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50862616 |
---attatatctcattgtcactcaacttttatgaatttgtatttgaatgtatgtt |
50862667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 209 - 376
Target Start/End: Original strand, 50749491 - 50749647
Alignment:
| Q |
209 |
ctcctattgacagcaaaactacacaactgcatgttctgcggcatattgggttggggtactgaatttgttacaggtaaatttacctctagtggtattgttt |
308 |
Q |
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||||| |||||||||||||||||||||| |||||||||| ||||||||| | |||||| |||||||||||||||||| |||| ||||| ||| || |
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| T |
50749491 |
ctcctgttgacagcaaaactacacaactacatgttctgcagcatattggat------actgaacttgttacaggtaaatttaactcttgtggttttgctt |
50749584 |
T |
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| Q |
309 |
ttcttgattgaacattattatatctcattgtcactcaacttttatgaatttgtatttgaatgtatgtt |
376 |
Q |
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|| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50749585 |
tt--taattgaacatgat---atctcattgtcactcaacttttatgaatttgtatttgaatgtatgtt |
50749647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 50749396 - 50749451
Alignment:
| Q |
130 |
gatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttatta |
185 |
Q |
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|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |
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| T |
50749396 |
gatttcattccttgcactacagattgccaaggtatgttctgtcatcacagttatta |
50749451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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