View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_47 (Length: 385)
Name: NF20816_high_47
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 10748712 - 10749082
Alignment:
| Q |
14 |
agatgaagtagcgtcttccggttgctcatcatttgttaatcattcttttttcttgacttagttaannnnnnnnnnn----agagagcattatgggattta |
109 |
Q |
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| T |
10748712 |
agatgaagtaacgtcttccggttgttcatcgtttgttaatcattcttttttctcgacttagttaagtctttttttttttgagagagcattgtgggattta |
10748811 |
T |
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| Q |
110 |
tttcttcattcatggttaattgtagtttatgggagactgaattaggtttcgtttgtaaatgtgttt----------aagttattaaaatgtacttatatg |
199 |
Q |
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| T |
10748812 |
tttcttcattcatggttaattgtcgtttatgggagactgaattaggtttcgtttgtaaatgtgttttaatttttttaagttattaaaatgtactcatatg |
10748911 |
T |
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| Q |
200 |
ggtggttatgcaaaaacnnnnnnnaaaggggtgtaaaaacttattttacaaaggtaatcttagagattgaaataattgtaatgagttacacagcaaactt |
299 |
Q |
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| T |
10748912 |
ggtggttatgcaaaaactttttttaaaggggtgtaaaaacttattttacaaaggtaatcttagagattgaaataattgtaatgagttacacagcaaactt |
10749011 |
T |
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| Q |
300 |
ctatgtgagagtttgatttgggagtaagaacgtag-caaggataacatagactgacaaaatgggaaattcc |
369 |
Q |
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| T |
10749012 |
atatgtgagagtttgatttgagagtaagaacgtagccaaggataacatagattgacaaaatgggaaattcc |
10749082 |
T |
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