View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_high_48 (Length: 383)
Name: NF20816_high_48
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_48 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 101101 - 101465
Alignment:
| Q |
1 |
tcctcttgaagggaatgtgtattaaatatttgcagtgtaaataccacaaatgaattagatgatcaaaattggacggtcccttgtaagaaatgagtcacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101101 |
tcctcttgaagggaatgtgtattaaatatttgcagtgtaaataccacaaatgaattagatgatcaaaattggacggtcccttgtaagaaatgagtcacat |
101200 |
T |
|
| Q |
101 |
cacatgtattgtctattccaatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101201 |
cacatgtattgtctattccaatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaa |
101300 |
T |
|
| Q |
201 |
tcatttcatactcctttttgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101301 |
tcatttcatactcctttttgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcct |
101400 |
T |
|
| Q |
301 |
ttcaattcaattcttatatatatgtctcaagtacagattctagtcactatccccatggcagggta |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101401 |
ttcaattcaattcttatatatatgtctcaagtacagattctagtcactatccccatggcagggta |
101465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 41122048 - 41121684
Alignment:
| Q |
1 |
tcctcttgaagggaatgtgtattaaatatttgcagtgtaaataccacaaatgaattagatgatcaaaattggacggtcccttgtaagaaatgagtcacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122048 |
tcctcttgaagggaatgtgtattaaatatttgcagtgtaaataccacaaatgaattagatgatcaaaattggacggtcccttgtaagaaatgagtcacat |
41121949 |
T |
|
| Q |
101 |
cacatgtattgtctattccaatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41121948 |
cacatgtattgtctattccaatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaa |
41121849 |
T |
|
| Q |
201 |
tcatttcatactcctttttgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41121848 |
tcatttcatactcctttttgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcct |
41121749 |
T |
|
| Q |
301 |
ttcaattcaattcttatatatatgtctcaagtacagattctagtcactatccccatggcagggta |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41121748 |
ttcaattcaattcttatatatatgtctcaagtacagattctagtcactatccccatggcagggta |
41121684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University