View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_56 (Length: 335)
Name: NF20816_high_56
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 35868779 - 35869081
Alignment:
| Q |
20 |
ctaatatttagaagacaaagtcccacaagtctgaaagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35868779 |
ctaatatttagaagacaaagtcccacaagtctgaaagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttat |
35868878 |
T |
|
| Q |
120 |
ataaggttagttcctgtaaggaaatctaattgtgagtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttacc |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35868879 |
ataaggttagttcctgtaaagaaatctaattgtgagtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttacc |
35868978 |
T |
|
| Q |
220 |
ttagaaaagaattcatgatcatgatgcaaatttgaagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacag |
319 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35868979 |
ttcgaaaagaattcatgatcatgatgcaaatttgaagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacag |
35869078 |
T |
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| Q |
320 |
cct |
322 |
Q |
| |
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||| |
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| T |
35869079 |
cct |
35869081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 24442980 - 24443282
Alignment:
| Q |
20 |
ctaatatttagaagacaaagtcccacaagtctgaaagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24442980 |
ctaatatttagaagacaaagtcccacaagtctgaaagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttat |
24443079 |
T |
|
| Q |
120 |
ataaggttagttcctgtaaggaaatctaattgtgagtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttacc |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24443080 |
ataaggttagttcctgtaaagaaatctaattgtgagtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttacc |
24443179 |
T |
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| Q |
220 |
ttagaaaagaattcatgatcatgatgcaaatttgaagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacag |
319 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24443180 |
ttcgaaaagaattcatgatcatgatgcaaatttgaagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacag |
24443279 |
T |
|
| Q |
320 |
cct |
322 |
Q |
| |
|
||| |
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| T |
24443280 |
cct |
24443282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 4916181 - 4916136
Alignment:
| Q |
233 |
catgatcatgatgcaaatttgaagttttcactattgtttcccattt |
278 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
4916181 |
catgaccatgctgcaaatttgaagttttcactattgtttcccattt |
4916136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 4910016 - 4909974
Alignment:
| Q |
233 |
catgatcatgatgcaaatttgaagttttcactattgtttccca |
275 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
4910016 |
catgaccatgctgcaaatttgaagttttcactattgtttccca |
4909974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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