View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_58 (Length: 328)
Name: NF20816_high_58
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_58 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 4050119 - 4050446
Alignment:
| Q |
1 |
ataccgttttctttcattttcttccgcaatccgctttgcctcaaggagtttcttacctgattgaatcctctcctaaaatcataccattgaaaagataatg |
100 |
Q |
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| T |
4050119 |
ataccgttttctttcattttcttctgcaatccgctttgcctcaaggagtttcttacctgattgaatcctctcctaaaatcataccattgaaaagataatg |
4050218 |
T |
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| Q |
101 |
aaaatctatgctagaatgtttaagggataactgctagagatgaaaccagaattaatgaaaatcatagtaactgcatgcttattggctatactatgaaaat |
200 |
Q |
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| T |
4050219 |
aaaatctatgctagaatgtttaagggataactgctagagatgaaaccagaattaattaaaatcatagtaactgcatgcttattggctatactatgaaaat |
4050318 |
T |
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| Q |
201 |
agcgcaacttatatatttttggagctgagaaaagatgtctctttgaaatatgcatcacaatgttatcaaatagtggcggccatatatagcagcagcatag |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4050319 |
agcgcaacttgtatatttttggagctgagaaaagatgtctctttgaaatatgcatcacaatgttattaaatagtggcggccatatatagcagcagcatag |
4050418 |
T |
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| Q |
301 |
cactacagactatagcgtagcggaattt |
328 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
4050419 |
cactatagactatagcgtagcggaattt |
4050446 |
T |
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