View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_59 (Length: 326)
Name: NF20816_high_59
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 5395570 - 5395276
Alignment:
| Q |
19 |
cacaaccaacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgt |
118 |
Q |
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| T |
5395570 |
cacaaccaacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgt |
5395471 |
T |
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| Q |
119 |
gacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacagttcaatgttaaggaacgtccttcgagccctcatc |
218 |
Q |
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| T |
5395470 |
gacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatc |
5395371 |
T |
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| Q |
219 |
ccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctaggatccttcgaaacgatcggtaagatcaaggcccatga |
313 |
Q |
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| T |
5395370 |
ccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctaggatccttcgaaacgatcggtaagatcaaggcccatga |
5395276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 5391752 - 5391465
Alignment:
| Q |
26 |
aacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgtgacacat |
125 |
Q |
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| T |
5391752 |
aacgtggaacactgataattatgttgactacattcaatgcgatgtctctgatcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacat |
5391653 |
T |
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| Q |
126 |
attttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacagttcaatgttaaggaacgtccttcgagccctcatcccaaata |
225 |
Q |
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| T |
5391652 |
attttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaata |
5391553 |
T |
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| Q |
226 |
ctctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctaggatccttcgaaacgatcggtaagatcaaggcccatga |
313 |
Q |
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| T |
5391552 |
ctctgaatctttgtcatgtgtcccttcaaacgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatga |
5391465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 47 - 304
Target Start/End: Complemental strand, 5401689 - 5401432
Alignment:
| Q |
47 |
tgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggacc |
146 |
Q |
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| T |
5401689 |
tgttcactatattcagtgtgatgtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggacc |
5401590 |
T |
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| Q |
147 |
agcatgcctacagaggctcaaaactgcgaagttaacagttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgt |
246 |
Q |
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|||| || || ||||||||||| || || || || || | ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| |||||||| |
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| T |
5401589 |
agcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgt |
5401490 |
T |
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| Q |
247 |
cccttcaaacaggaactaagcactacctaggatccttcgaaacgatcggtaagatcaa |
304 |
Q |
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| T |
5401489 |
ctcttcagactggtgccaagcactatgtaggacccttcgaaatcatcggtaagatcaa |
5401432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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