View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_high_65 (Length: 310)

Name: NF20816_high_65

Description: NF20816

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20816_high_65

[»] chr1 (1 HSPs)

Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 211; E-Value: 1e-115

Query Start/End: Original strand, 7 - 293

Target Start/End: Complemental strand, 46618455 - 46618158

Alignment:

Q	7	acatgattcttatgtacactcacatgcatagtaaggaatttaacttcnnnnnnnnnctctctaaagtgaaggatatcaaggaagattcacatgatttaat	106	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46618455	acatgtttcttatgtacactcacatgcatagtaaggaatttaacct-tttttttctctctctaaagtgaaggatatcaaggaagattcacatgatttaat	46618357	T

Q	107	tgtgttttgatttaatattgtttctataaccatttatgatgagttatgaggtcattctgcatacaacaatgtgggctataagaatcctgttaaaattact	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46618356	tgtgttttgatttaatattgtttctataaccatttatgatgagttatgaggtcattctgcatacaacaatgtgggctataagaatcctgttaaaattact	46618257	T

Q	207	gtta------------aaatccacgtgatatccattgaaattcatattttatttttatcaattttactttctaacctggctctggcttacattaatatt	293	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	46618256	gttaaaattactgttaaaatccacgtgatatccattgaaattcatattttatttttatcaattttactttctaacctggctctggcttacagtaatatt	46618158	T

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