View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_74 (Length: 279)
Name: NF20816_high_74
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_74 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 7332771 - 7333035
Alignment:
| Q |
11 |
gatgaatcagaagggtttgtaactaaatcgttaccttttggaagagaatattcttccttgcacttgtccatgaatgaggaaaaaggtgacaccaagaaat |
110 |
Q |
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| T |
7332771 |
gatgaatcagaagggtttgtaactaaatcgttaccttttggaagagaatattcctccttgcacttgtccatgaatgaggataaaggtgacaccaagaaat |
7332870 |
T |
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| Q |
111 |
taagctcttaactaattcttgctttgttttaatttattttataaatctctgaagtgtaggagcagaaagtggatcaggtgcataatg--------aggtt |
202 |
Q |
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| T |
7332871 |
taagctcttaactaattcttgctttgttttaatttattttataaatctctgaagtataggagcagaaagtggatcaggtgcataatgataaataaaggtt |
7332970 |
T |
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| Q |
203 |
gattggttgttttaccaaatacaaagtcaaagacaacatatattcacaccaatgttctcggcttc |
267 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7332971 |
gattcgttgttttaccaaatacaaagtcaaagacaacatatattcacaccaatgttctcggcttc |
7333035 |
T |
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