View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_75 (Length: 278)
Name: NF20816_high_75
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 48249222 - 48248975
Alignment:
| Q |
13 |
tgaagattatggtgtgacaagtatggtgatgttgtgctggatgtggtgaaaaaggaattcaaaaaccatgttgaagaaatggaaaacaagcgcagcattt |
112 |
Q |
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| T |
48249222 |
tgaagatcatggtgtgacaagtatggtgatgttgtgctggatgtggtgaaaaaggaattcaaaaaccacgttgaagaaatggaaaacaagcgcagcattt |
48249123 |
T |
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| Q |
113 |
caagagaaaaacatttgtccggcaactcaaagcggtggacaacatttgatgatgatgaaaacgttcatccaaatctttttggtcatcatgataattcagt |
212 |
Q |
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| T |
48249122 |
caagagaaaaacatttgtccggcaactcaaagcggtggacaacatttgatgatgatgaaaacgttcatccaaatctttttggtcatcatgataattcagt |
48249023 |
T |
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| Q |
213 |
tcgcagtagtaacatcaatccattttcgcaaggttatgctgagagtac |
260 |
Q |
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| T |
48249022 |
tcgcagtagtaacatcaatccattttcgcaaggttatgctgagagtac |
48248975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 48248286 - 48248202
Alignment:
| Q |
176 |
ttcatccaaatctttttggtcatcatgataattcagttcgcagtagtaacatcaatccattttcgcaaggttatgctgagagtac |
260 |
Q |
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| T |
48248286 |
ttcatccaaatcttattgttcatcatgataattcagttcgcagtcgtaacatcaaaccattttctcatggctatgctgagagtac |
48248202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 18813710 - 18813947
Alignment:
| Q |
24 |
gtgtgacaagtatggtgatgttgtgctggatgtggtgaaaaaggaattcaaaaaccatgttgaagaaatggaaaacaagcgcagcatttcaagagaaaaa |
123 |
Q |
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| T |
18813710 |
gtgtgacaagcatggtgatgttgtgctgcatgtggtgaaaaaggaattcaaaaaccatgttgaagaaacggaaaacaagcgcaacatttcaagagaaaaa |
18813809 |
T |
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| Q |
124 |
catttgtccggcaactcaaagcggtggacaacatttgatgatgatgaaaacgttcatccaaatctttttggtcatcatgataattcagttcgcagtagt- |
222 |
Q |
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| T |
18813810 |
catttgtccggcaactcaaagcggtgaacaacatttgatgatgatgaaaacgttcatccaaatctttttggtcatcaggataattcagttcgcagtagta |
18813909 |
T |
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| Q |
223 |
aacatcaatccattttcgcaaggttatgctgagagtac |
260 |
Q |
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| T |
18813910 |
aacattaatccattttcacatggttatgctgagagtac |
18813947 |
T |
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