View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_high_76 (Length: 277)

Name: NF20816_high_76
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_high_76
NF20816_high_76
[»] chr7 (10 HSPs)
chr7 (165-263)||(36440011-36440109)
chr7 (13-161)||(24825783-24825932)
chr7 (13-166)||(32793006-32793160)
chr7 (17-175)||(37873406-37873565)
chr7 (13-166)||(11324271-11324425)
chr7 (17-161)||(37879077-37879222)
chr7 (97-165)||(9402559-9402627)
chr7 (91-166)||(24825557-24825632)
chr7 (91-161)||(32792786-32792856)
chr7 (98-165)||(11324052-11324119)
[»] chr8 (4 HSPs)
chr8 (13-166)||(3068772-3068926)
chr8 (13-161)||(3305842-3305991)
chr8 (91-166)||(3069076-3069151)
chr8 (91-166)||(3305617-3305692)
[»] chr4 (13 HSPs)
chr4 (13-166)||(41315897-41316051)
chr4 (13-161)||(23254600-23254749)
chr4 (13-161)||(15874231-15874380)
chr4 (13-166)||(42305903-42306056)
chr4 (13-161)||(20878696-20878845)
chr4 (13-161)||(38484464-38484614)
chr4 (13-170)||(55893208-55893363)
chr4 (91-161)||(23254380-23254450)
chr4 (91-167)||(55893473-55893549)
chr4 (91-161)||(42306206-42306276)
chr4 (91-166)||(15874530-15874605)
chr4 (99-161)||(41316208-41316270)
chr4 (96-161)||(38485175-38485240)
[»] chr3 (11 HSPs)
chr3 (13-161)||(40560682-40560831)
chr3 (13-161)||(33794437-33794585)
chr3 (13-167)||(20124652-20124808)
chr3 (13-161)||(5048007-5048156)
chr3 (13-156)||(2439993-2440137)
chr3 (13-161)||(14783738-14783887)
chr3 (13-171)||(31724346-31724505)
chr3 (91-166)||(5048306-5048381)
chr3 (91-161)||(2439773-2439843)
chr3 (96-175)||(14784027-14784107)
chr3 (98-166)||(31724657-31724725)
[»] scaffold0291 (2 HSPs)
scaffold0291 (13-161)||(11278-11427)
scaffold0291 (13-166)||(10952-11106)
[»] chr5 (5 HSPs)
chr5 (13-161)||(31155565-31155714)
chr5 (16-161)||(31155896-31156042)
chr5 (16-161)||(39761540-39761686)
chr5 (91-161)||(39760427-39760497)
chr5 (91-161)||(31156195-31156265)
[»] chr1 (10 HSPs)
chr1 (13-161)||(7709925-7710074)
chr1 (13-166)||(34492452-34492606)
chr1 (13-161)||(52331630-52331779)
chr1 (13-161)||(37646880-37647029)
chr1 (26-161)||(13618337-13618473)
chr1 (45-161)||(13618539-13618656)
chr1 (91-166)||(52331405-52331480)
chr1 (91-161)||(7709703-7709773)
chr1 (98-166)||(13618254-13618322)
chr1 (99-161)||(34492240-34492302)
[»] chr2 (4 HSPs)
chr2 (13-166)||(12414060-12414214)
chr2 (13-166)||(12426120-12426274)
chr2 (17-166)||(4731910-4732060)
chr2 (91-161)||(4731718-4731788)
[»] scaffold0428 (2 HSPs)
scaffold0428 (13-161)||(7493-7642)
scaffold0428 (91-161)||(7777-7847)
[»] chr6 (13 HSPs)
chr6 (13-161)||(16766292-16766441)
chr6 (13-176)||(33746700-33746864)
chr6 (13-161)||(16368823-16368972)
chr6 (16-161)||(6851252-6851398)
chr6 (13-167)||(11242289-11242444)
chr6 (13-139)||(20582831-20582958)
chr6 (91-161)||(20582639-20582709)
chr6 (91-166)||(29846981-29847056)
chr6 (91-161)||(16766562-16766632)
chr6 (13-161)||(11246274-11246423)
chr6 (99-161)||(33746961-33747023)
chr6 (98-166)||(16368639-16368707)
chr6 (98-166)||(29846787-29846855)
[»] scaffold0184 (2 HSPs)
scaffold0184 (21-161)||(7183-7325)
scaffold0184 (91-166)||(7016-7091)
[»] scaffold0032 (2 HSPs)
scaffold0032 (11-125)||(32959-33076)
scaffold0032 (91-166)||(33218-33293)
[»] scaffold1408 (1 HSPs)
scaffold1408 (50-161)||(1747-1859)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 36440109 - 36440011
Alignment:
Q  165 ttcaaaatattaaagcaccactccatttgtccatttcatgcttgcttagtgttactcctcgtgatggctcaatcatttggtccatggacgaagaatttg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36440109 ttcaaaatattaaagcaccactccatttgtccatttcatgcttgcttagtgttactcctcgtgatggctcaatcatttggtccatggacgaagaatttg 36440011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 24825783 - 24825932
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||       ||| ||||||| ||||||||||||||||| |||    
T  24825783 taggcattttggtgacttgttatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttttcaa 24825882  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  24825883 ggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 24825932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 32793006 - 32793160
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||       ||  ||||||| |||||||||||||||||||||    
T  32793006 taggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcagggactgatttctgaatttttattttacaa 32793105  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||   ||||||  ||||||||||||||||||||| ||||    
T  32793106 ggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaagcctt 32793160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 37873565 - 37873406
Alignment:
Q  17 cattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaaggac 115  Q
    |||||||||||  |||||| | ||||||||||||||||||||||||||||||||||       ||  ||||||||| |||||||||||||||||||||||    
T  37873565 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggactgatttctgaatttttattttacaaggac 37873466  T
Q  116 caaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttcaaaatatt 175  Q
    ||||||||||||||  |||||||  ||||||||||||||||||||| |||| || |||||    
T  37873465 caaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctttaatatatt 37873406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 11324271 - 11324425
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||       |||  || ||| |||||||||||||||||||||    
T  11324271 taggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggagattgatttctgaatttttattttacaa 11324370  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||||||||||||||||   |||||||  |||||||| |||||||||||| ||||    
T  11324371 ggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaagcctt 11324425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 37879077 - 37879222
Alignment:
Q  17 cattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaaggac 115  Q
    |||||||||||  |||||| | ||||||||||||||||||||||||||||||||||       ||  ||| ||||| |||||||||||||||||||||||    
T  37879077 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggattgatttctgaatttttattttacaaggac 37879176  T
Q  116 caaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||| ||||||||  |||||||||| ||||||||||    
T  37879177 caaaacttaaacgggtcatatttgcagggacgagtacaatatttaa 37879222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 9402627 - 9402559
Alignment:
Q  97 atttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacct 165  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaaacct 9402559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 24825632 - 24825557
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||  ||||||||||||||||||||| ||||    
T  24825632 ttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaagcctt 24825557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 32792856 - 32792786
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  | |||||||||||||||||||    
T  32792856 ttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaa 32792786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 11324119 - 11324052
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacct 165  Q
    ||||| ||||||| |||| ||||||||| |||  |||||||  |||||||||||||||||||||||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaaacct 11324052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 3068926 - 3068772
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  3068926 taggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 3068827  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  3068826 ggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 3068772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 3305842 - 3305991
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||       ||| ||||||| |||| ||||||||||||||||    
T  3305842 taggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatttttttgcggggactgatttctaaatttttattttacaa 3305941  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||  |||||||||||||  |||||||  |||||||||||||||||||||    
T  3305942 ggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 3305991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 3069076 - 3069151
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  3069076 ttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 3069151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 3305692 - 3305617
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||||| ||||    
T  3305692 ttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaagcctt 3305617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 41316051 - 41315897
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  41316051 taggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 41315952  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||| |||||||  |||||||| |||||||||||| ||||    
T  41315951 ggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagcctt 41315897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 23254600 - 23254749
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  23254600 taggtattttggtgacttgtcatgacttaaatgagcccaggagtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 23254699  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  23254700 ggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 23254749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 15874380 - 15874231
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |       ||| ||||||||| |||||||||||||||||||    
T  15874380 taggcattttggtgacttgtcatgccttaaatgcgcccaggggtatttttaaaagacaaatttttttgcggggactgatttctgaatttttattttacaa 15874281  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  15874280 ggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 15874231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 42306056 - 42305903
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||       ||| ||||||||| ||||||||||||||||| |    
T  42306056 taggcattttggtgacttgtcatgacttaaatgggac-aggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacga 42305958  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||| |||||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  42305957 ggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 42305903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 20878845 - 20878696
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||       ||| ||||||| |||||||||||||||||||||    
T  20878845 taggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcggggactgatttctgaatttttattttacaa 20878746  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||  |||||||  ||||| ||||| ||| |||||    
T  20878745 ggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaa 20878696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 38484614 - 38484464
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnn-gcgaggactgatt-ctgaatttttattttaca 110  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||        || | |||||||| ||||||||||||||||||    
T  38484614 taggcattttggtgacttgtcatgacttaaatggacccagggatatttttaaaagacagattttttttgcaaagactgatttctgaatttttattttaca 38484515  T
Q  111 aggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||  |||||||| || ||||||||||||||||||    
T  38484514 aggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaa 38484464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 55893363 - 55893208
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgattctgaatttttattttacaag 112  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||       ||| ||| |  |||||||||||||||||||||     
T  55893363 taggcattttggtgacttgtcatgacttaaatgagcccagggctatttttaaaagacagatttttttgcggggaat--ttctgaatttttattttacaat 55893266  T
Q  113 gaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttcaaa 170  Q
     ||||||||||||||||  |||||||  || |||| ||||||||||||| ||| ||||    
T  55893265 aaccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaagcctacaaa 55893208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 23254450 - 23254380
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  23254450 ttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 23254380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 55893473 - 55893549
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttc 167  Q
    ||||||||||||||||| ||||||||||||||||||||   |||||||| ||||||||||||||||||||| |||||    
T  55893473 ttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaagccttc 55893549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 42306206 - 42306276
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||| ||||||||||    
T  42306206 ttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaa 42306276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 15874530 - 15874605
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||||  |||||||||||||||| |||| ||||    
T  15874530 ttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagcctt 15874605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 41316208 - 41316270
Alignment:
Q  99 ttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||||||||||||| | |||||||  |||||||||||||||||||||    
T  41316208 ttttattttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaa 41316270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 38485175 - 38485240
Alignment:
Q  96 aatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||| ||||||| |||| ||||||||||||| ||||||||  |||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 38485240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 40560682 - 40560831
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  40560682 taggtattttagtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 40560781  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  40560782 ggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 40560831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 33794585 - 33794437
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  33794585 taggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttt-gcggggactgatttctgaatttttattttacaa 33794487  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  33794486 ggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 33794437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 20124808 - 20124652
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggccc-aggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttaca 110  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |       ||| ||||||||| ||||||||||||||||||    
T  20124808 taggcattttggtgacttgtcattacttaaatgggccccaggggtatttttaaaagacatatttttttgcggggactgatttctgaatttttattttaca 20124709  T
Q  111 aggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttc 167  Q
    | |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  20124708 aagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaagccttc 20124652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 5048156 - 5048007
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||       ||| ||||||||| |||||||||||||||||||    
T  5048156 taggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagatagattttttcgcggggactgatttctgaatttttattttacaa 5048057  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    | ||||||||||||||||| |||||||| | |||||||||||||||||||    
T  5048056 gaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaa 5048007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 2439993 - 2440137
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  2439993 taggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 2440092  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaata 156  Q
    | ||||||||||||||||| |||||||| | ||||||||||||||    
T  2440093 gaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 14783887 - 14783738
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |       ||| ||||||||| |||||||||||||||||||    
T  14783887 taggcattttggtgacttgtcatgacttaaatgggcccaggggcatttttaaacgacaaatttttttgcggggactgatttctgaatttttattttacaa 14783788  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||  |||||||  |||||| ||||||||||||||    
T  14783787 ggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaa 14783738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 31724505 - 31724346
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| |       ||| ||||||||| |||||||||||||||||||    
T  31724505 taggcattttggtgacttgtcatgacttaaatgggtccaagggtatttttaaaagacaaatttttttgcggggactgatttctgaatttttattttacaa 31724406  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttcaaaa 171  Q
    ||||||||| ||||||||  |||||||  | ||||||||||||||||||| |||| ||||    
T  31724405 ggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagccttaaaaa 31724346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 5048306 - 5048381
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||| |||||||||||||||||||  |||||||  ||||||||||||||||||||| ||||    
T  5048306 ttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 5048381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 2439843 - 2439773
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||| |||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  2439843 ttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 2439773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 14784027 - 14784107
Alignment:
Q  96 aatttttatttt-acaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttcaaaatatt 175  Q
    |||||||||||| ||| |||| ||||||||||||| ||||||||  ||||||||||||||||||||| |||  ||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctagaaaatatt 14784107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 31724657 - 31724725
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||||| |||||  |||| |||||||||||||  |||||||  | ||||||||||||||||||| ||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcctt 31724725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 11278 - 11427
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||    
T  11278 taggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatttttttgcgaggactgatttctgaatttttattttacaa 11377  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  11378 ggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaa 11427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 11106 - 10952
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||    
T  11106 taggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatttttttgcgaggactgatttctgaatttttattttacaa 11007  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||| ||||||||  |||||||  ||||||||||||||||||||| ||||    
T  11006 ggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 10952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 31155565 - 31155714
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |       ||| ||||||||| |||||||||||||||||||    
T  31155565 taggcattttggtgacttgtcatgacttaaatgggcccaagggtatttttaaaagacatatttttttgcggggactgatttctgaatttttattttacaa 31155664  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  31155665 ggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 31155714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 31156042 - 31155896
Alignment:
Q  16 gcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaagga 114  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |       ||||||||||||| ||||||||||||||||||||||    
T  31156042 gcattttggtgacttgtcataacttaaatgggcccaggggtatttttaaaagacatatttttttgcgaggactgatttctgaatttttattttacaagga 31155943  T
Q  115 ccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||  ||||||||  |||||||||  ||||||||||    
T  31155942 ccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaa 31155896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 39761540 - 39761686
Alignment:
Q  16 gcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaagga 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||       ||  ||||||| ||||||||||||||||||||||||    
T  39761540 gcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcagggactgatttctgaatttttattttacaagga 39761639  T
Q  115 ccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||   |||||||  |||||| ||||||||||||||    
T  39761640 ccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaa 39761686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 39760497 - 39760427
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  39760497 ttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 39760427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 31156195 - 31156265
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  31156195 ttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaa 31156265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 7709925 - 7710074
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||       || |||||||||| |||||||||||||||||||    
T  7709925 taggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatttttttgcaaggactgatttctgaatttttattttacaa 7710024  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||| |||||||||||||| |||||||  |||||||||||||||||||||    
T  7710025 ggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 7710074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 34492452 - 34492606
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgat-tctgaatttttattttacaa 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||       ||| | |||||| ||||||||||||||||||||    
T  34492452 taggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcgggaactgatgtctgaatttttattttacaa 34492551  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||||||||||||||| || |||||||  ||| ||||||||||||||||| ||||    
T  34492552 ggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaagcctt 34492606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 52331630 - 52331779
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |       ||| ||||||| |||| ||||||||||||||||    
T  52331630 taggcattttgatgacttgtcatgacttaaatgggcccaggggtatttttaaaagataaatttttttgcggggactgatttctaaatttttattttacaa 52331729  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||| ||||||||||||||  |||||||  |||||||||||||||||||||    
T  52331730 ggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 52331779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 37646880 - 37647029
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||  ||||||| || ||||||||||||||||||    
T  37646880 taggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcacggactgatttttgaatttttattttacaa 37646979  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||   |||||||  ||  |||| ||||||||||||    
T  37646980 ggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaa 37647029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 13618337 - 13618473
Alignment:
Q  26 gatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaaggaccaaaactta 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||  ||| ||| |||||| |||||||||||||||||||||||||||    
T  13618337 gatttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaactta 13618436  T
Q  125 aacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||  |||||||  |||||||| ||||||||||||    
T  13618437 aacgggccatatttgcagggacgaatgcaatatttaa 13618473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 13618539 - 13618656
Alignment:
Q  45 gggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagg 143  Q
    ||||||||||||||||||||||||||||       ||  ||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||  |||    
T  13618539 gggcccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagg 13618638  T
Q  144 gacgagtgcaatatttaa 161  Q
    ||||| ||||||||||||    
T  13618639 gacgaatgcaatatttaa 13618656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 52331480 - 52331405
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||| ||||    
T  52331480 ttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 52331405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 7709773 - 7709703
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||| ||||||||||    
T  7709773 ttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaa 7709703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 13618322 - 13618254
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||| ||||||| |||| ||||||||||||| ||||||||  ||||| ||||||||||||||| ||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaagcctt 13618254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 34492302 - 34492240
Alignment:
Q  99 ttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||| ||||||| |||| |||||||||||||  |||||||  |||||||||||||||||||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 34492240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 12414060 - 12414214
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||       ||| ||||||| |||||||||||||||||||||    
T  12414060 taggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 12414159  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||  |||||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  12414160 ggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 12414214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 12426120 - 12426274
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||       ||| ||||||| |||||||||||||||||||||    
T  12426120 taggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 12426219  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||  |||||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  12426220 ggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 12426274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 4731910 - 4732060
Alignment:
Q  17 cattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaaggac 115  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |       ||| ||||||||| |||||||||||||||||||||||    
T  4731910 cattttggtgacttgtcatgacttaaatgggcccagggatatttttaaaagacatatttttttgcggggactgatttctgaatttttattttacaaggac 4732009  T
Q  116 caaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||| |||||||  ||||| ||||||||||||||| ||||    
T  4732010 caaaacttaaacggaccatatttgcagggatgagtgcaatatttaagcctt 4732060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 4731788 - 4731718
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||||||||    
T  4731788 ttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaa 4731718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 7642 - 7493
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||| ||| ||| |||||||||||||||||| ||    
T  7642 taggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggattgatttctgaatttttattttagaa 7543  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  7542 ggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 7493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 7777 - 7847
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||  |||||||||||||||||||||    
T  7777 ttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaa 7847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 16766441 - 16766292
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  16766441 taggcattttggtgacttgccatgacttaaatgggcccaagggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 16766342  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
     |||||||||||||| || ||||||||  |||||||||||||||||||||    
T  16766341 agaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaa 16766292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 33746864 - 33746700
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||  ||| ||| ||||||||||||||||||||     
T  33746864 taggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcagggattgatttctgaatttttattttacat 33746765  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttcaaaatatta 176  Q
    |||| |||||||||||||  |||||||  ||||||||||||||||||||| |||| ||| |||||    
T  33746764 ggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccttgaaattatta 33746700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 16368823 - 16368972
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |       |   ||||||||| ||||||||| ||||||||     
T  16368823 taggcattttggtgacttgtcatgatttaaatgggcccaggggtatttttaaaagacaaatttttttgtagggactgatttctgaattttcattttacac 16368922  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  16368923 ggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaa 16368972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 6851398 - 6851252
Alignment:
Q  16 gcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaagga 114  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||        | | | ||||||| ||||||||||||||||||| ||    
T  6851398 gcattttggtgacttgtcatgacttaaatggatccaggggtatttttaaaagacagttttttttgtgggaactgatttctgaatttttattttacaaaga 6851299  T
Q  115 ccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||    
T  6851298 ccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaa 6851252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 11242444 - 11242289
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaa 111  Q
    ||||||||||||| |  |||||||||||||||||| ||| | ||||||||||||||||||       ||| ||||||||| |||||||||||||||||||    
T  11242444 taggcattttggtcacctgtcatgacttaaatgggtccatgagtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttacaa 11242345  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaaccttc 167  Q
    ||| ||||||||||| |   ||||||||| |||||||||||||||||||| |||||    
T  11242344 ggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaagccttc 11242289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 20582831 - 20582958
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactga-ttctgaatttttattttacaa 111  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||       ||| || |||| |||| ||||||||||||||||    
T  20582831 taggcattttgatgacttgtcatgacttaaatgggcccagggatatttttaaaagacagatttttttgcggggtctgatttctaaatttttattttacaa 20582930  T
Q  112 ggaccaaaacttaaacggatcatattta 139  Q
    ||||||||||||||||||  ||||||||    
T  20582931 ggaccaaaacttaaacgggccatattta 20582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 20582709 - 20582639
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  20582709 ttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaa 20582639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 29846981 - 29847056
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||||  |||||||||||||||||  |||||||  ||||||||||||||||||||| ||||    
T  29846981 ttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 29847056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 16766562 - 16766632
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||  |||||||| ||||||||||||    
T  16766562 ttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaa 16766632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 11246274 - 11246423
Alignment:
Q  13 taggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcgaggactgattc-tgaatttttattttacaa 111  Q
    ||||||||||||| |  | ||||||||||||| |  | |||||||||| ||||||||| |       | | |||||||||  ||||||||||||||||||    
T  11246274 taggcattttggtaacctttcatgacttaaatagatctaggggtatttataaaagacaaatttttttgtggggactgatttgtgaatttttattttacaa 11246373  T
Q  112 ggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    ||||  |||||||||| ||||||||||  ||||| |||||||||||||||    
T  11246374 ggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaa 11246423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 33746961 - 33747023
Alignment:
Q  99 ttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||| |||||||||||| |||||||||||||  |||||||  ||||||| |||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaa 33747023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 16368707 - 16368639
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||| ||||||| |||| |||||||||||    |||||||  ||||||||||||||||||||| ||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcctt 16368639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 29846855 - 29846787
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||| ||||||| |||| |||||||||| |   |||||||  ||||||||||||||||||||| ||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaagcctt 29846787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 7183 - 7325
Alignment:
Q  21 ttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaa-gacagannnnnnngcgaggactgatt-ctgaatttttattttacaaggaccaa 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||       ||| ||||||||| ||||||||||||||||||||||||||    
T  7183 ttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaaagacagatttttttgcggggactgatttctgaatttttattttacaaggaccaa 7282  T
Q  119 aacttaaacggatcatatttatagggacgagtgcaatatttaa 161  Q
    |||||||||||  |||||||  |||||||| | ||||||||||    
T  7283 aacttaaacgggccatatttgcagggacgaatccaatatttaa 7325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 7091 - 7016
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||  ||| ||||||||||||||||| ||||    
T  7091 ttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagcctt 7016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 33076 - 32959
Alignment:
Q  11 cataggcattttggtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacaga--nnnnnnngcgaggactga-ttctgaatttttatttt 107  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||         ||| ||||||| |||||||||||||||||    
T  33076 cataggcattttggtgacttgtcatgacttatatgggtccaggggtatttttaaaagacagatttttttttgcggggactgatttctgaatttttatttt 32977  T
Q  108 acaaggaccaaaacttaa 125  Q
    ||||||||||||||||||    
T  32976 acaaggaccaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 33218 - 33293
Alignment:
Q  91 ttctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacgagtgcaatatttaaacctt 166  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||||||||||||||||||||    
T  33218 ttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaaacctt 33293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 1859 - 1747
Alignment:
Q  50 caggggtatttttaaaagacagannnnnnngcgaggactgatt-ctgaatttttattttacaaggaccaaaacttaaacggatcatatttatagggacga 148  Q
    |||||||||||||||||||||||       ||| ||| ||||| |||||||||||||||| ||||||||||||||||||||  |||||||  ||||||||    
T  1859 caggggtatttttaaaagacagatttttttgcggggattgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacga 1760  T
Q  149 gtgcaatatttaa 161  Q
    |||||||||||||    
T  1759 gtgcaatatttaa 1747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University