View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_77 (Length: 272)
Name: NF20816_high_77
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_77 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 50 - 257
Target Start/End: Original strand, 7208860 - 7209067
Alignment:
| Q |
50 |
cacatatctagtttcattcacactcatttcacaatcctagcctagaaaagacccacgatatatcaaactcatatgattattaatgactatgatatcttaa |
149 |
Q |
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| T |
7208860 |
cacatatctagtttcattcacactcatttcacaatcctagcctagaaaagacccacgatatatcaaactcatatgattattaatgactatgatatcttaa |
7208959 |
T |
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| Q |
150 |
taagaagattcagataccctcaacagaaaacaaaacaaactaaatggaaaattttcatctctttcaaaaccaaaccattcttagctttgaactttgagct |
249 |
Q |
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| T |
7208960 |
taagaagattcagataccctcaacagaaaacaaaacaaactaaatggaaaattttcatctctttcaaaaccaaaccattcttagctttgaactttgagct |
7209059 |
T |
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| Q |
250 |
caaactcc |
257 |
Q |
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|||||||| |
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| T |
7209060 |
caaactcc |
7209067 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 29260224 - 29260278
Alignment:
| Q |
190 |
taaatggaaaattttcatctctttcaaaaccaaaccattcttagctttgaacttt |
244 |
Q |
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|||||||||| |||| | ||||||||||||||||||||||| | ||||||||||| |
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| T |
29260224 |
taaatggaaactttttaactctttcaaaaccaaaccattctaatctttgaacttt |
29260278 |
T |
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