View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_80 (Length: 257)
Name: NF20816_high_80
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_80 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 31651460 - 31651690
Alignment:
| Q |
13 |
aaaatcaaatcaaaacacaatttctaatacaatactattttttgcaaatttccatgttttggtgaaaatcaaaacacaatttccatgtttctttgactgt |
112 |
Q |
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| T |
31651460 |
aaaatcaaatcaaaacacaatctctaatacaatactattttttgcaaatttccatgttttggtgaaaa------catcaagcccgt---tctttgactgt |
31651550 |
T |
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| Q |
113 |
ggttccagtaggactataaagaaacgtgtgacaaagtgttagatacgagctacttgttatttttatttacccgcaagacgaagtaaaattaaattaatat |
212 |
Q |
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| T |
31651551 |
ggttccagtaggactataaagaaacgtgtgacaaagtgttagatacgagctacttgttatttttatttactcgcaagacgaagta-----aaattaatat |
31651645 |
T |
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| Q |
213 |
agtgaaagttcagaaactaaattgatagtttattttgagtttcga |
257 |
Q |
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| T |
31651646 |
agtgaaagttcagaaactaaattgatagtttattttgagtttcga |
31651690 |
T |
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