View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_high_98 (Length: 239)
Name: NF20816_high_98
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_high_98 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 39538379 - 39538151
Alignment:
| Q |
10 |
acatcatcattggaatttacaatgctgtactatctgtacccgtgcannnnnnnagagttcaattaataattccaattggtctagaagattgctgtaatga |
109 |
Q |
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| T |
39538379 |
acatcatcattggaatttacaatgctgtactatctgtacccgtgcatttttttagagttcaattaataattccaattggtctagaa-attgctgtaatga |
39538281 |
T |
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| Q |
110 |
attttaaaatgttgcagaattttggaaacaaattcctccaaacgaaccttatcgtgtcattcttggaggtgtgagggacaaactgtataatactcgtgaa |
209 |
Q |
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| T |
39538280 |
attttaaaatgttgcagaattttggaaacaaattcctccaaacgaaccttatcgtgtcattcttggaggtgtgagggacaaactgtataatactcgtgaa |
39538181 |
T |
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| Q |
210 |
cgtgctcgccagttattagctaatgagaac |
239 |
Q |
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| T |
39538180 |
cgtgctcgccagttattagctaatgagaac |
39538151 |
T |
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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 1553356 - 1553286
Alignment:
| Q |
164 |
tgtcattcttggaggtgtgagggacaaactgtataatactcgtgaacgtgctcgccagttattagctaatg |
234 |
Q |
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| T |
1553356 |
tgtcattcttggaggtgtgagggacaaactgtataatacacgtgaatgtgctcgacagttattagcaaatg |
1553286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 30908526 - 30908424
Alignment:
| Q |
122 |
tgcagaattttggaaacaaattcctccaaacgaaccttatcgtgtcattcttggaggtgtgagggacaaactgtataatactcgtgaacgtgctcgccag |
221 |
Q |
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| T |
30908526 |
tgcagagttttggaaacaggttcctccaaccgagccatatcgtgttattctaggtgatgtgagggacaaactatataatacacgtgaacatgcccgacag |
30908427 |
T |
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| Q |
222 |
tta |
224 |
Q |
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||| |
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| T |
30908426 |
tta |
30908424 |
T |
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