View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_1 (Length: 1243)
Name: NF20816_low_1
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 1122; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1122; E-Value: 0
Query Start/End: Original strand, 1 - 1223
Target Start/End: Original strand, 28079733 - 28080953
Alignment:
| Q |
1 |
caatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattccgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28079733 |
caatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattccgcc |
28079832 |
T |
|
| Q |
101 |
acttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28079833 |
acttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagcga |
28079932 |
T |
|
| Q |
201 |
aagaaagctggacctacgcgattttctggcaatcttcttacgactacaacatggctacaccgctactcggctggggtgatggatattacaaaggggaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28079933 |
aagaaagctggacctacgcgattttctggcaatcttcttacgactacaccatggctacacctctactcggctggggtgatggatattacaaaggagaaga |
28080032 |
T |
|
| Q |
301 |
tgacaaagtaaaattgaaacgagttacacctccggaagaacaggctcatcgtagaaagattctccgtgagcttaatacgttaatttctggtggttcgtct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
28080033 |
tgacaaagtaaaattgaaacgagttacacctccggaagaacaggctcatcgtagaaagattctccgtgagcttaatacgttaatttctggtggttcatct |
28080132 |
T |
|
| Q |
401 |
gtctcagatgatgccgttgaggaagatgtcaccgacactgagtggttttttctcacgtcgatgactcaatcctttgtcaacggcaccggatcactgagtc |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28080133 |
gtctctgatgatgccgttgaggaagatgtcaccgacactgagtggttttttctcacgtcgatgactcaatcctttgtcaacggcaccggatcactgagtc |
28080232 |
T |
|
| Q |
501 |
aggcttatttcaattcaaccccggtgtggatcaccggggctgagaggctttccggttcagcatgtgaacgggcccgtgaagcacgggtccatgggtttca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28080233 |
aggcttatttcaattcaaccccggtgtggatcaccggggctgagaggctttccggttcaccatgtgaacgggcccgtgaagcacgggtccatgggtttca |
28080332 |
T |
|
| Q |
601 |
gaccttggtatgtataccaacttcttcaagtggggtggttgagcttgcttctacggaaatgattccatacaacgctgatctaatggagaagattcgtgtt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28080333 |
gaccttggtatgtataccaacttcttcaagtggggtggttgagcttgcttctacggaaatgattccatacaacgctgatctaatggagaagattcgtgtt |
28080432 |
T |
|
| Q |
701 |
ttgtttaatttcaacaatcctgaaacaggttcatggccattgaattccattacaacgagcgagaacgatccttcctcggtctggctcaacgatctctccg |
800 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28080433 |
ttgtttaattttaacaatcctgaaacaggttcgtggccgttgaattccattacaacgagcgagaacgatccttcctcggtctggctcaacgatctctccg |
28080532 |
T |
|
| Q |
801 |
cctctgcagccattgaaattcgagagtccaccgttaacactgccgctgtgcctgcaatgaacgcaaccatttctgcaaatgcaacagttggtaaaacatt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
28080533 |
cctctgcagccattgaaattcgagagtccacagttaacactgccgctgtgcctgcaatgaacgcaaccattcctgcaaatgcaacagttggtaaaacatt |
28080632 |
T |
|
| Q |
901 |
accgtttgaaacaaatggttcaaccagtactataacggaaacaccaactgcagttaactttgctcaacgccagaatcagaacaaccagaaccagagcttt |
1000 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
28080633 |
accgtttgaaacaaatggttcgaccagtactctaacggaaa---caactgcagttaactttgctcagcgccagaatcagaacaaccagaaccatagcttt |
28080729 |
T |
|
| Q |
1001 |
tttctgaaggaactgaatttttctggttcaatgaaaccagaatccggggagattctgagttttggtgaaagt-aaaaaagttcttatatcaccggaaatg |
1099 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28080730 |
tttctgaaggaactaaatttttctggttcaatgaaaccggaatccggggagattctgagtttcggtgaaagtaaaaaaagttcttatatcaccggaaatg |
28080829 |
T |
|
| Q |
1100 |
gaactttcttttctggtcagtcacagttcgtcgctggtgaagaaaacagaaaaagaaagtctcctgtatccagaagcagcattgacgatggaatgctttc |
1199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
28080830 |
gaactttcttttctggtcagtcacagttcgtcgctggtgaagaaaacagaaaaagaaagtctcctatatccagaagcagcattgacgatggaatgctttc |
28080929 |
T |
|
| Q |
1200 |
gtttacttccggtgtagtcttgcc |
1223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28080930 |
gtttacttccggtgtagtcttgcc |
28080953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 12884546 - 12884644
Alignment:
| Q |
148 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
246 |
Q |
| |
|
|||||| ||||| |||||||| || |||||||| ||| | |||||||| || ||||||| |||||||||||| |||||||||||| ||||||||||||| |
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| T |
12884546 |
attcaaccaagacactctccaacaacgtcttcaggctttaatcgaaggtgcaaaagaaatctggacctacgctattttctggcaaccttcttacgacta |
12884644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 12836517 - 12836615
Alignment:
| Q |
148 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
246 |
Q |
| |
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|||||| ||||| |||||||| || |||||||||||| | || ||||| | ||||||| |||||||||||| || ||||||||| ||||||| ||||| |
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| T |
12836517 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12836615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 12868357 - 12868455
Alignment:
| Q |
148 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
246 |
Q |
| |
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|||||| ||||| |||||||| || |||||||||||| | || ||||| | ||||||| |||||||||||| || ||||||||| ||||||| ||||| |
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|
| T |
12868357 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12868455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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