View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20816_low_10 (Length: 639)

Name: NF20816_low_10
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20816_low_10
NF20816_low_10
[»] chr6 (9 HSPs)
chr6 (57-94)||(12777047-12777084)
chr6 (57-94)||(24976359-24976396)
chr6 (57-94)||(24977790-24977827)
chr6 (58-94)||(12770793-12770829)
chr6 (57-94)||(12800124-12800161)
chr6 (58-94)||(3894873-3894909)
chr6 (191-228)||(796698-796735)
chr6 (191-228)||(8273092-8273129)
chr6 (57-94)||(12766777-12766814)
[»] chr5 (2 HSPs)
chr5 (57-94)||(40235022-40235059)
chr5 (191-228)||(19944036-19944073)
[»] chr4 (5 HSPs)
chr4 (57-94)||(28745660-28745697)
chr4 (57-94)||(39936172-39936209)
chr4 (149-221)||(14177081-14177153)
chr4 (107-221)||(28608680-28608794)
chr4 (160-213)||(20706182-20706234)
[»] chr3 (7 HSPs)
chr3 (57-94)||(16724893-16724930)
chr3 (57-94)||(18177763-18177800)
chr3 (57-94)||(20204910-20204947)
chr3 (57-94)||(22261753-22261790)
chr3 (57-94)||(22266709-22266746)
chr3 (57-94)||(24835090-24835127)
chr3 (57-94)||(35269869-35269906)
[»] chr2 (3 HSPs)
chr2 (57-94)||(14106085-14106122)
chr2 (57-94)||(43822061-43822098)
chr2 (57-94)||(44909816-44909853)
[»] chr1 (4 HSPs)
chr1 (57-94)||(4449652-4449689)
chr1 (57-94)||(9826474-9826511)
chr1 (57-94)||(31279297-31279334)
chr1 (58-94)||(9812079-9812115)
[»] chr8 (2 HSPs)
chr8 (149-221)||(12933811-12933883)
chr8 (161-198)||(36999937-36999974)
[»] chr7 (1 HSPs)
chr7 (191-228)||(6692086-6692123)


Alignment Details
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 12777047 - 12777084
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12777047 gatccagggacctgtgggttatgggcccaccacgcttc 12777084  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 24976359 - 24976396
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24976359 gatccagggacctgtgggttatgggcccaccacgcttc 24976396  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 24977790 - 24977827
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24977790 gatccagggacctgtgggttatgggcccaccacgcttc 24977827  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 12770793 - 12770829
Alignment:
Q  58 atccagggacctgtgggttatgggcccaccacgcttc 94  Q
    |||||||||||||||||||||||||||||||||||||    
T  12770793 atccagggacctgtgggttatgggcccaccacgcttc 12770829  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 12800124 - 12800161
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12800124 gatccagggacctgtaggttatgggcccaccacgcttc 12800161  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 3894873 - 3894909
Alignment:
Q  58 atccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||| |||||||||||||||||||||||||||||||    
T  3894873 atccaaggacctgtgggttatgggcccaccacgcttc 3894909  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  191 tctccatgaagaaatgcagttttcacatccaactgctc 228  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  191 tctccatgaagaaatgcagttttcacatccaactgctc 228  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 12766777 - 12766814
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  12766777 gatccagggacctatgggttatgggcccaccatgcttc 12766814  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 40235022 - 40235059
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40235022 gatccagggacctgtgggttatgggcccaccacgcttc 40235059  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  191 tctccatgaagaaatgcagttttcacatccaactgctc 228  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 28745660 - 28745697
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28745660 gatccagggacctgtgggttatgggcccaccacgcttc 28745697  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 39936209 - 39936172
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39936209 gatccagggacctgtgggttatgggcccaccacgcttc 39936172  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 14177153 - 14177081
Alignment:
Q  149 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 221  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177153 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 28608680 - 28608794
Alignment:
Q  107 ctcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaat 205  Q
    ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||    
T  28608680 ctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaat 28608778  T
Q  206 gcagttttcacatcca 221  Q
    ||||| || |||||||    
T  28608779 gcagtctttacatcca 28608794  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  160 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 213  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 16724893 - 16724930
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16724893 gatccagggacctgtgggttatgggcccaccacgcttc 16724930  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 18177763 - 18177800
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18177763 gatccagggacctgtgggttatgggcccaccacgcttc 18177800  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 20204947 - 20204910
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20204947 gatccagggacctgtgggttatgggcccaccacgcttc 20204910  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 22261790 - 22261753
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22261790 gatccagggacctgtgggttatgggcccaccacgcttc 22261753  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 22266709 - 22266746
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22266709 gatccagggacctgtgggttatgggcccaccacgcttc 22266746  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 24835090 - 24835127
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24835090 gatccagggacctgtgggttatgggcccaccacgcttc 24835127  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 35269869 - 35269906
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35269869 gatccagggacctgtgggttatgggcccaccacgcttc 35269906  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 14106085 - 14106122
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14106085 gatccagggacctgtgggttatgggcccaccacgcttc 14106122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 43822098 - 43822061
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43822098 gatccagggacctgtgggttatgggcccaccacgcttc 43822061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 44909853 - 44909816
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44909853 gatccagggacctgtgggttatgggcccaccacgcttc 44909816  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 4449652 - 4449689
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4449652 gatccagggacctgtgggttatgggcccaccacgcttc 4449689  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 9826474 - 9826511
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9826474 gatccagggacctgtgggttatgggcccaccacgcttc 9826511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 31279297 - 31279334
Alignment:
Q  57 gatccagggacctgtgggttatgggcccaccacgcttc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31279297 gatccagggacctgtgggttatgggcccaccacgcttc 31279334  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 9812079 - 9812115
Alignment:
Q  58 atccagggacctgtgggttatgggcccaccacgcttc 94  Q
    |||||||||||| ||||||||||||||||||||||||    
T  9812079 atccagggacctatgggttatgggcccaccacgcttc 9812115  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 12933883 - 12933811
Alignment:
Q  149 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 221  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933883 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  161 ggttgctccatataaatctcctcttccaaatctccatg 198  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  191 tctccatgaagaaatgcagttttcacatccaactgctc 228  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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