View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_100 (Length: 237)
Name: NF20816_low_100
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_100 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 39537856 - 39538084
Alignment:
| Q |
9 |
tccataacgtctgtgtgcctctctgactcttgacggatgtcgagccttacgagtgaaagtccaaatgtagaaacttgccgcaagaaatcaagtaagcttc |
108 |
Q |
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| T |
39537856 |
tccataacgtctgtgtgcctctctgactcttgacggatgtcgagccttacgagtgaaagtccaaatgtagaaacttgccgcaagaaatcaagtaagcttc |
39537955 |
T |
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| Q |
109 |
catctgctattgctcggtcaccacatgcacagagtgacctgtaacacagttcaagaggctccaaaaactacaaggnnnnnnntcaaagttagagtgtaac |
208 |
Q |
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| T |
39537956 |
catctgctattgctcggtcaccacatgcacagagtgacctgtaacacagttcaagaggctccaaaaactacaaggaaaaaaatcaaagttagagtgtaac |
39538055 |
T |
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| Q |
209 |
gattcatgtgcaataataccattgcttgt |
237 |
Q |
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| T |
39538056 |
gattcatgtgcaataataccattgcttgt |
39538084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 32096737 - 32096608
Alignment:
| Q |
51 |
agccttacgagtgaaagtccaaatgtagaaacttgccgcaagaaatcaagtaagcttccatctgctattgctcggtcaccacatgcacagagtgacctgt |
150 |
Q |
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| T |
32096737 |
agccttacaagtgacagtccgaaagtggaaacttgcctcaagaaatcaagaaggcttccatcggcaattgcacgatcaccacaagcacagagtgatctgt |
32096638 |
T |
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| Q |
151 |
aacacagttcaagaggctccaaaaactaca |
180 |
Q |
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| T |
32096637 |
agcagagttcaagaggttccagaaactaca |
32096608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 30907643 - 30907816
Alignment:
| Q |
7 |
catccataacgtctgtgtgcctctctgactcttgacggatgtcgagccttacgagtgaaagtccaaatgtagaaacttgccgcaagaaatcaagtaagct |
106 |
Q |
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| T |
30907643 |
catccataacatcagtgtgcctgtctgattcttgacggatgtcaagtttgacaagtgaaagcccgaaggtggaaacttgccgcaagaaatcaagaagact |
30907742 |
T |
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| Q |
107 |
tccatctgctattgctcggtcaccacatgcacagagtgacctgtaacacagttcaagaggctccaaaaactaca |
180 |
Q |
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| T |
30907743 |
tccatcagctattggttgatcaccacatgcacacaatgacctatagcatagttcaagaggctccaagaactaca |
30907816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 1552902 - 1553064
Alignment:
| Q |
7 |
catccataacgtctgtgtgcctctctgactcttgacggatgtcgagccttacgagtgaaagtccaaatgtagaaacttgccgcaagaaatcaagtaagct |
106 |
Q |
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| T |
1552902 |
catccataacatctgtgtgcctgtctgactcttggcggatgtcaagtcttacgagtgaaagtccaaatgtggatactt-----aagccctca------tt |
1552990 |
T |
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| Q |
107 |
tccatctgctattgctcggtcaccacatgcacagagtgacctgtaacacagttcaagaggctccaaaaactaca |
180 |
Q |
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| T |
1552991 |
tctgtctgctatcgatcggtcaccacatgcgcagagtgacctataacacagctcaagaggctcgagaaactaca |
1553064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 22567352 - 22567204
Alignment:
| Q |
30 |
tctgactcttgacggatgtcgagccttacgagtgaaagtccaaatgtagaaacttgccgcaagaaatcaagtaagcttccatctgctattgctcggtcac |
129 |
Q |
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| T |
22567352 |
tctgactcttgcctaatatcaagcctcactagtgacagaccaaaagtagagacttgcctcaagaaatctagaagacttccatcagcaattgcgcgatcac |
22567253 |
T |
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| Q |
130 |
cacatgcacagagtgacctgtaacacagttcaagaggctccaaaaacta |
178 |
Q |
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|||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| |
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| T |
22567252 |
cacaagcacaaagtgatctataacagagttcaagaggttccaagaacta |
22567204 |
T |
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