View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20816_low_105 (Length: 227)
Name: NF20816_low_105
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 794476 - 794262
Alignment:
| Q |
1 |
acttacaattttgggttttatgtatatattattgttttctatttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataaaaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
794476 |
acttacaattttgggttttatgtatatattattgttttctatttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataagaaaga |
794377 |
T |
|
| Q |
101 |
agtcatgttgcatagtattacaagaagctcttagatattggatgtagtgtataagaagtagaactaggctataaatctttcgnnnnnnnaagatcacatt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
794376 |
agtcatgttgcggagtattacaagaagctcttagatattggatgtagtgtataagaagtagaactaggctataaatctttcgtttttttaagatcacatt |
794277 |
T |
|
| Q |
201 |
tgctccgtatatatt |
215 |
Q |
| |
|
|||||| |||||||| |
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| T |
794276 |
tgctccatatatatt |
794262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 4056002 - 4055835
Alignment:
| Q |
9 |
ttttgggttttatgtatatattattgttttctatttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataaaaaagaagtcatgt |
108 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
4056002 |
ttttgggttttatgcatattttattgttttctatttcagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgt |
4055903 |
T |
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| Q |
109 |
tgcatagtattacaagaagctcttagatattggatgtagtgtataagaagtagaactaggctataaat |
176 |
Q |
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| T |
4055902 |
tgcggagtattacaagaagctcttagatattggatatagtgtataagaagtataactaggctataaat |
4055835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 25067805 - 25067972
Alignment:
| Q |
9 |
ttttgggttttatgtatatattattgttttctatttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataaaaaagaagtcatgt |
108 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
25067805 |
ttttgggttttatgcatattttattgttttctatttcagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgt |
25067904 |
T |
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| Q |
109 |
tgcatagtattacaagaagctcttagatattggatgtagtgtataagaagtagaactaggctataaat |
176 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
25067905 |
tgcggagtattacaagaagctcttagatattggatatagtgtataagaagtataactaggctataaat |
25067972 |
T |
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