View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20816_low_106 (Length: 226)
Name: NF20816_low_106
Description: NF20816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20816_low_106 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 25689595 - 25689381
Alignment:
| Q |
7 |
atataatccgaactgcatatttacaagctttgaatagacatgagcaattttagaacagttcggattgtatttaccaaaatatagttctgattatatttgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25689595 |
atataatccgaactgcatatttacaagctttgaatagacatgagcaattttagaacagttcggattgtatttaccaaaatatagttctgattttatttgc |
25689496 |
T |
|
| Q |
107 |
cgaataaagggtattttgagaagnnnnnnnnnnnnnnnntaggacgcataagtaacacataaggtgcgaaaagtaataatcaggagcagttcttatatta |
206 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25689495 |
cgaacaaagggtattttgagaag-----aagaaaaaaaataggacgcataagtaacacataaggtgcaaaaagtaataatcaggagcagttcttatatta |
25689401 |
T |
|
| Q |
207 |
ttttggattatgggtttgaa |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25689400 |
ttttggattatgggtttgaa |
25689381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 25690409 - 25690471
Alignment:
| Q |
16 |
gaactgcatatttacaagctttgaatagacatgagcaattttagaacagttcggattgtattt |
78 |
Q |
| |
|
|||| ||||||| | | |||||||||||||||||| ||||||| || | |||||||||||||| |
|
|
| T |
25690409 |
gaaccgcatattcataggctttgaatagacatgagaaattttaaaataattcggattgtattt |
25690471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 5588428 - 5588367
Alignment:
| Q |
6 |
aatataatccgaactgcatatttacaagctttgaatagacatgagcaattttagaacagttc |
67 |
Q |
| |
|
|||||||||| ||||||||||| | | |||||||||| | |||||||||||||||||||||| |
|
|
| T |
5588428 |
aatataatccaaactgcatattcataggctttgaataaatatgagcaattttagaacagttc |
5588367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 24626487 - 24626397
Alignment:
| Q |
33 |
gctttgaatagacatgagcaattttagaacagttcggattgtatttaccaaaatatagttctgattatatttgccgaataaagggtatttt |
123 |
Q |
| |
|
|||||| |||| |||||||||||||| || |||| ||||| ||||| | ||||||| |||| ||||||||| || || |||||||||||| |
|
|
| T |
24626487 |
gctttggataggcatgagcaattttataatagtttggattatatttgctaaaatattgttcatattatatttacctaacaaagggtatttt |
24626397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University